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SCNpilot_expt_1000_bf_scaffold_15240_curated_3

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 934..1272

Top 3 Functional Annotations

Value Algorithm Source
Nodulation repressor NolR {ECO:0000313|EMBL:EYR83491.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 92.0
  • Coverage: 112.0
  • Bit_score: 196
  • Evalue 2.50e-47
ArsR family transcriptional regulator n=1 Tax=Rhizobium giardinii RepID=UPI00036C1FA5 similarity UNIREF
DB: UNIREF100
  • Identity: 72.9
  • Coverage: 107.0
  • Bit_score: 145
  • Evalue 2.80e-32
nolR; nodulation protein NolR similarity KEGG
DB: KEGG
  • Identity: 70.6
  • Coverage: 109.0
  • Bit_score: 142
  • Evalue 7.30e-32

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 339
ATGGACAAGATTTCAGACGCAGAACACGCACAGGCCGAAGTTGCATCCGATTTTCTTTCCGCCATGGCCAATCCCAAGCGCCTTCTCATCCTGAAGGTCCTGGTGAGCGGCGAAATCGCCGTCGGCGCGCTTGCAAATCAGGTCGGCCTCAGCCAGTCGGCCCTGTCGCAGCATCTTTCGAAACTGCGCGCGCAGAACCTCGTGACCACCCGTCGCGATGCGCAGACCATCTACTATTCCAGCAAGTCGGATGCCGTGATGACCATTCTCGAAGCGCTCGATCAAATCTACAGGGGCTCGGGCAACGGCGCGGCGGAAAAGAAGCTCCGCATCGCCTGA
PROTEIN sequence
Length: 113
MDKISDAEHAQAEVASDFLSAMANPKRLLILKVLVSGEIAVGALANQVGLSQSALSQHLSKLRAQNLVTTRRDAQTIYYSSKSDAVMTILEALDQIYRGSGNGAAEKKLRIA*