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SCNpilot_expt_1000_bf_scaffold_9484_curated_2

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 234..545

Top 3 Functional Annotations

Value Algorithm Source
transcriptional regulator n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI0003653B7A similarity UNIREF
DB: UNIREF100
  • Identity: 98.0
  • Coverage: 99.0
  • Bit_score: 198
  • Evalue 2.50e-48
Integration host factor subunit beta {ECO:0000256|HAMAP-Rule:MF_00381, ECO:0000256|RuleBase:RU003941}; Short=IHF-beta {ECO:0000256|HAMAP-Rule:MF_00381};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 98.0
  • Coverage: 99.0
  • Bit_score: 198
  • Evalue 3.50e-48
ihfB; integration host factor subunit beta; K05788 integration host factor subunit beta similarity KEGG
DB: KEGG
  • Identity: 96.0
  • Coverage: 99.0
  • Bit_score: 196
  • Evalue 5.20e-48

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 312
ATGGGGGAAACCGTGATCAAGTCGGAACTGGTTCAGATCGTCGCAGCCCGCAATCCCCATCTCTATCACCGCGATGTCGAGAACATCGTCAATGCGGTGCTGGATGAGATCACGGATGCTCTTGCCGCGGGAAACCGCGTGGAGCTGCGTGGCTTCGGCGCCTTCTCCGTCAAGAACCGCCCCTCGCGCTCGGGCCGCAACCCGCGCACGGGCGATGCGGTCTTCGTCGAGGAAAAGTGGGTGCCGTTCTTCAAGACGGGCAAGGAGCTGCGCGAGCGCCTCAATCCGGGCCAGGCCGACCAGGACGATTGA
PROTEIN sequence
Length: 104
MGETVIKSELVQIVAARNPHLYHRDVENIVNAVLDEITDALAAGNRVELRGFGAFSVKNRPSRSGRNPRTGDAVFVEEKWVPFFKTGKELRERLNPGQADQDD*