ggKbase home page

SCNpilot_expt_1000_bf_scaffold_9484_curated

Search features with annotation key words

Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_9484_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..218
DNA (216bp) protein (72aa)
Putative signal peptide peptidase SppA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CGA2_9RHIZ
Putative signal peptide peptidase SppA {ECO:0000313|EMBL:EYR83290.1}; EC=3.4.21.- {ECO:0000313|EMBL:EYR83290.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_9484_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

234..545
DNA (312bp) protein (104aa)
transcriptional regulator n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI0003653B7A
Integration host factor subunit beta {ECO:0000256|HAMAP-Rule:MF_00381, ECO:0000256|RuleBase:RU003941}; Short=IHF-beta {ECO:0000256|HAMAP-Rule:MF_00381};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ihfB; integration host factor subunit beta; K05788 integration host factor subunit beta
SCNpilot_expt_1000_bf_scaffold_9484_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

644..988
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D599_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR83288.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_9484_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1007..1408)
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D0L0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR83287.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K09386 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_9484_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1545..2609
DNA (1065bp) protein (355aa)
Putative SAM-dependent methyltransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EXF3_9RHIZ rbh
Putative SAM-dependent methyltransferase {ECO:0000313|EMBL:EYR83286.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SAM-dependent methyltransferase protein; K06969 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] rbh
SCNpilot_expt_1000_bf_scaffold_9484_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2606..3460
DNA (855bp) protein (285aa)
Putative RNA methyltransferase,TrmH family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CG98_9RHIZ rbh
Putative RNA methyltransferase,TrmH family {ECO:0000313|EMBL:EYR83285.1}; EC=2.1.1.- {ECO:0000313|EMBL:EYR83285.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
spoU; rRNA methylase; K03437 RNA methyltransferase, TrmH family rbh
SCNpilot_expt_1000_bf_scaffold_9484_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3797..3931
DNA (135bp) protein (45aa)
Lipoprotein signal peptidase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWB4_9RHIZ
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
lipoprotein signal peptidase; K03101 signal peptidase II [EC:3.4.23.36]
SCNpilot_expt_1000_bf_scaffold_9484_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3988..6276
DNA (2289bp) protein (763aa)
Signal transduction histidine-protein kinase BarA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D597_9RHIZ rbh
Signal transduction histidine-protein kinase BarA {ECO:0000313|EMBL:EYR83283.1}; EC=2.7.13.3 {ECO:0000313|EMBL:EYR83283.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative sensor histidine kinase transmembrane protein rbh
SCNpilot_expt_1000_bf_scaffold_9484_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6376..7251
DNA (876bp) protein (292aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D0K5_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR83282.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein rbh
Displaying 9 items

View Taxonomy