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SCNpilot_expt_1000_bf_scaffold_5136_curated_5

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 4262..5125

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor SigJ; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 76.4
  • Coverage: 284.0
  • Bit_score: 433
  • Evalue 5.30e-119
  • rbh
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1BBD9_PARDP similarity UNIREF
DB: UNIREF100
  • Identity: 76.4
  • Coverage: 284.0
  • Bit_score: 433
  • Evalue 1.70e-118
  • rbh
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ABL72833.1}; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 76.4
  • Coverage: 284.0
  • Bit_score: 433
  • Evalue 2.40e-118

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Taxonomy

Paracoccus denitrificans → Paracoccus → Rhodobacterales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 864
ATGCGGCGTGATCCCGCCACTGATGTCTTCGAGGCGCAGCGGCCCCGGCTGCTGCGCCTTGCCTATCGCATGCTCGGCTCGCATGCGGAGGCGGAGGATATCGTGCAGGATGCCTGGCTGCGCTGGCACCGCAGCGACCGCGCGGCGGTGGCCGAGCCCGCCGCCTGGCTCACGCGCATCGTCTCGCGCCTCTGCCTCGACGCGATGAAATCCGCCCGCGCACGGCGCGAGACCTATCCCGGAACCTGGCTTCCTGAGCCGCTGATCGAGCCCGCGGACGAGGAGATGCGCGCCGACAACATCACCCTCACGCTCATGGTGGCGCTGGAACGGCTTTCGCCGCTGGAGCGCGCGGCCTTCCTGCTGCACGACGTCTTCGACCAGCCGCTCGACGACGTGGCGGCGACGCTGAAGCGCAGCCCGGCGGCCACCCGGCAGCTCGCGGCACGGGCGCGCGCCCATGTGCGGATCGACCAGCCGCGCTACGAGATCGCCCGCAAGGACGGCGAGGCGCTGACGCGCGCCTTCTTCGAGGCCTGCCGCGCCGGCGATGCGGCGGCGCTCGGCGCCATGCTGGCGGCGGACGTGACGCTGCGCTCGGACGGCGGCGGCAAGGTGCTCGCCTTCCCCAACGCCATCCATGGCGTCGACCGGCTGATCCGCCTCTATCTCGGCCTCTCGCGCAAGCTGGGTCCGCAGATGGAATTCCTCGGCCATGCGATGATCGACGGCCTGCCCGGTTTCCTCAGCCGCGTCGACGGTCACCTGCAGACCACGGCGGTGGAAATCGTCGACGGCCGCATCGCCGCCATCTATATCACGCGCAACCCGGACAAGCTGACGAGCCTCGCGCTGCCGAACTAG
PROTEIN sequence
Length: 288
MRRDPATDVFEAQRPRLLRLAYRMLGSHAEAEDIVQDAWLRWHRSDRAAVAEPAAWLTRIVSRLCLDAMKSARARRETYPGTWLPEPLIEPADEEMRADNITLTLMVALERLSPLERAAFLLHDVFDQPLDDVAATLKRSPAATRQLAARARAHVRIDQPRYEIARKDGEALTRAFFEACRAGDAAALGAMLAADVTLRSDGGGKVLAFPNAIHGVDRLIRLYLGLSRKLGPQMEFLGHAMIDGLPGFLSRVDGHLQTTAVEIVDGRIAAIYITRNPDKLTSLALPN*