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SCNpilot_expt_1000_bf_scaffold_7192_curated_6

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 6989..7225

Top 3 Functional Annotations

Value Algorithm Source
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 97.4
  • Coverage: 78.0
  • Bit_score: 151
  • Evalue 4.90e-34
transcription elongation factor GreA; K03624 transcription elongation factor GreA similarity KEGG
DB: KEGG
  • Identity: 97.4
  • Coverage: 78.0
  • Bit_score: 150
  • Evalue 1.90e-34
transcription elongation factor GreA n=1 Tax=Sinorhizobium medicae RepID=UPI000317408F similarity UNIREF
DB: UNIREF100
  • Identity: 97.4
  • Coverage: 78.0
  • Bit_score: 150
  • Evalue 6.00e-34

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 237
ATGTCCGGCTCCAAGATCAAGTTCGGCGCCCGCGTGAAGCTCGTCGACGAGGACACCGAGGAAGAGAAGGTCTACCAGATCGTCGGCGACCAGGAAGCCGACGTGAAGCAGGGCCGCATCTCGATCTCCTCCCCCATCGCCCGCGCCCTCATCGGCAAGGAAGTCGGCGACTCGATCGAAGTCAACGCCCCCGGCGGCTCCAAGGCCTATGAGATTCTGGCGGTAAGCTGGGGTTGA
PROTEIN sequence
Length: 79
MSGSKIKFGARVKLVDEDTEEEKVYQIVGDQEADVKQGRISISSPIARALIGKEVGDSIEVNAPGGSKAYEILAVSWG*