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SCNpilot_expt_1000_bf_scaffold_7192_curated

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_7192_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..1613
DNA (1611bp) protein (537aa)
Carbamoyl-phosphate synthase large chain n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQT1_9RHIZ
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
carB; carbamoyl-phosphate synthase large subunit (EC:6.3.5.5); K01955 carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
SCNpilot_expt_1000_bf_scaffold_7192_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1836..3293)
DNA (1458bp) protein (486aa)
Helicase/glycosylase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CY40_9RHIZ rbh
Helicase/glycosylase {ECO:0000313|EMBL:EYR84466.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
phage SPO1 DNA polymerase-related protein; K02334 DNA polymerase bacteriophage-type [EC:2.7.7.7] rbh
SCNpilot_expt_1000_bf_scaffold_7192_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4550..5515)
DNA (966bp) protein (322aa)
Short chain alcohol dehydrogenase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EJQ6_9RHIZ rbh
Short chain alcohol dehydrogenase {ECO:0000313|EMBL:EYR78006.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
short chain alcohol dehydrogenase rbh
SCNpilot_expt_1000_bf_scaffold_7192_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5526..6275)
DNA (750bp) protein (250aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C1Z4_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR78005.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7192_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6285..6548)
DNA (264bp) protein (88aa)
Uncharacterized protein {ECO:0000313|EMBL:EYR78004.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00036E0691
SCNpilot_expt_1000_bf_scaffold_7192_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6989..7225
DNA (237bp) protein (79aa)
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transcription elongation factor GreA; K03624 transcription elongation factor GreA
transcription elongation factor GreA n=1 Tax=Sinorhizobium medicae RepID=UPI000317408F
SCNpilot_expt_1000_bf_scaffold_7192_curated_7
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7236..7574
DNA (339bp) protein (113aa)
glycosyl transferase family 1 n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI000366D0C4
Lipopolysaccharide core biosynthesis mannosyltransferase LpsB {ECO:0000313|EMBL:AHK44400.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
lpsB; lipopolysaccharide core biosynthesis mannosyltransferase LpsB; K12989 mannosyltransferase [EC:2.4.1.-]
SCNpilot_expt_1000_bf_scaffold_7192_curated_8
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7583..8281
DNA (699bp) protein (233aa)
Strain MEJ076 contig_9, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ02731.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
lpsB; lipopolysaccharide core biosynthesis mannosyltransferase LpsB (EC:2.-.-.-); K12989 mannosyltransferase [EC:2.4.1.-] rbh
Lipopolysaccharide core biosynthesis mannosyltransferase LpsB n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3MD18_RHISN rbh
SCNpilot_expt_1000_bf_scaffold_7192_curated_9
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8344..9081
DNA (738bp) protein (246aa)
glycosyl transferase; K07270 glycosyl transferase, family 25
Glycosyl transferase n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JYZ9_AGRVS
Glycosyl transferase {ECO:0000313|EMBL:ACM37245.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_expt_1000_bf_scaffold_7192_curated_10
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9092..9823)
DNA (732bp) protein (244aa)
Uncharacterized protein {ECO:0000313|EMBL:KGJ07773.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
hypothetical protein
Uncharacterized protein n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B5P8_PARDP
SCNpilot_expt_1000_bf_scaffold_7192_curated_11
alpha proteobacterium HIMB59, Pelagibacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9963..10841
DNA (879bp) protein (293aa)
FkbM family methyltransferase
Methyltransferase, FkbM family n=1 Tax=alpha proteobacterium HIMB59 RepID=J9Z0P2_9PROT
Methyltransferase, FkbM family {ECO:0000313|EMBL:AFS48825.1}; TaxID=744985 species="Bacteria; Proteobacteria; Alphaproteobacteria; Pelagibacterales; Pelagibacteraceae.;" source="alpha proteobacterium HIMB59.;"
SCNpilot_expt_1000_bf_scaffold_7192_curated_12
Sulfitobacter sp. NAS-14.1, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10865..11719
DNA (855bp) protein (285aa)
Putative glycosyltransferase n=1 Tax=Sulfitobacter sp. EE-36 RepID=A3SFK3_9RHOB rbh
Uncharacterized protein {ECO:0000313|EMBL:EAP79700.1}; TaxID=314267 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter sp. NAS-14.1.;"
putative glycosyltransferase protein
SCNpilot_expt_1000_bf_scaffold_7192_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13366..14355
DNA (990bp) protein (330aa)
Thioredoxin reductase TrxB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVL1_9RHIZ rbh
Thioredoxin reductase {ECO:0000256|RuleBase:RU003881}; EC=1.8.1.9 {ECO:0000256|RuleBase:RU003881};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
thioredoxin reductase; K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9] rbh
SCNpilot_expt_1000_bf_scaffold_7192_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14702..15376
DNA (675bp) protein (225aa)
Transcriptional regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ET00_9RHIZ rbh
Transcriptional regulator {ECO:0000313|EMBL:EYR79046.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
yafC3; HTH-type transcriptional regulator YafC rbh
SCNpilot_expt_1000_bf_scaffold_7192_curated_15
unknown

Not on your lists

comp(15292..15459)
DNA (168bp) protein (56aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7192_curated_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15879..16184
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C6Y0_9RHIZ
Putative transcriptional regulator {ECO:0000313|EMBL:EYR79043.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7192_curated_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16221..17330
DNA (1110bp) protein (370aa)
N-ethylmaleimide reductase NemA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EPM2_9RHIZ rbh
N-ethylmaleimide reductase NemA {ECO:0000313|EMBL:EYR79042.1}; EC=1.-.-.- {ECO:0000313|EMBL:EYR79042.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
NADH:flavin oxidoreductase; K10680 N-ethylmaleimide reductase [EC:1.-.-.-] rbh
SCNpilot_expt_1000_bf_scaffold_7192_curated_18
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17437..17760
DNA (324bp) protein (108aa)
Sodium/calcium exchanger membrane region n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HIF2_9RHIZ
Sodium/calcium exchanger membrane region {ECO:0000313|EMBL:EPE97850.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
chaA; LPS-associated cation exporter (Ca2+/H+ antiporter) protein; K07300 Ca2+:H+ antiporter
Displaying 18 items

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