name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_expt_1000_bf_scaffold_7192_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
3..1613
|
Carbamoyl-phosphate synthase large chain n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQT1_9RHIZ
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
carB; carbamoyl-phosphate synthase large subunit (EC:6.3.5.5); K01955 carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
|
|
SCNpilot_expt_1000_bf_scaffold_7192_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(1836..3293)
|
Helicase/glycosylase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CY40_9RHIZ
rbh
Helicase/glycosylase {ECO:0000313|EMBL:EYR84466.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
phage SPO1 DNA polymerase-related protein; K02334 DNA polymerase bacteriophage-type [EC:2.7.7.7]
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_7192_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(4550..5515)
|
Short chain alcohol dehydrogenase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EJQ6_9RHIZ
rbh
Short chain alcohol dehydrogenase {ECO:0000313|EMBL:EYR78006.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
short chain alcohol dehydrogenase
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_7192_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(5526..6275)
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C1Z4_9RHIZ
rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR78005.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_7192_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(6285..6548)
|
Uncharacterized protein {ECO:0000313|EMBL:EYR78004.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00036E0691
|
|
SCNpilot_expt_1000_bf_scaffold_7192_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
6989..7225
|
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transcription elongation factor GreA; K03624 transcription elongation factor GreA
transcription elongation factor GreA n=1 Tax=Sinorhizobium medicae RepID=UPI000317408F
|
|
SCNpilot_expt_1000_bf_scaffold_7192_curated_7
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
7236..7574
|
glycosyl transferase family 1 n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI000366D0C4
Lipopolysaccharide core biosynthesis mannosyltransferase LpsB {ECO:0000313|EMBL:AHK44400.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
lpsB; lipopolysaccharide core biosynthesis mannosyltransferase LpsB; K12989 mannosyltransferase [EC:2.4.1.-]
|
|
SCNpilot_expt_1000_bf_scaffold_7192_curated_8
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
7583..8281
|
Strain MEJ076 contig_9, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ02731.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
lpsB; lipopolysaccharide core biosynthesis mannosyltransferase LpsB (EC:2.-.-.-); K12989 mannosyltransferase [EC:2.4.1.-]
rbh
Lipopolysaccharide core biosynthesis mannosyltransferase LpsB n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3MD18_RHISN
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_7192_curated_9
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
8344..9081
|
glycosyl transferase; K07270 glycosyl transferase, family 25
Glycosyl transferase n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JYZ9_AGRVS
Glycosyl transferase {ECO:0000313|EMBL:ACM37245.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
|
|
SCNpilot_expt_1000_bf_scaffold_7192_curated_10
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(9092..9823)
|
Uncharacterized protein {ECO:0000313|EMBL:KGJ07773.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
hypothetical protein
Uncharacterized protein n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B5P8_PARDP
|
|
SCNpilot_expt_1000_bf_scaffold_7192_curated_11
alpha proteobacterium HIMB59, Pelagibacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
9963..10841
|
FkbM family methyltransferase
Methyltransferase, FkbM family n=1 Tax=alpha proteobacterium HIMB59 RepID=J9Z0P2_9PROT
Methyltransferase, FkbM family {ECO:0000313|EMBL:AFS48825.1}; TaxID=744985 species="Bacteria; Proteobacteria; Alphaproteobacteria; Pelagibacterales; Pelagibacteraceae.;" source="alpha proteobacterium HIMB59.;"
|
|
SCNpilot_expt_1000_bf_scaffold_7192_curated_12
Sulfitobacter sp. NAS-14.1, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
10865..11719
|
Putative glycosyltransferase n=1 Tax=Sulfitobacter sp. EE-36 RepID=A3SFK3_9RHOB
rbh
Uncharacterized protein {ECO:0000313|EMBL:EAP79700.1}; TaxID=314267 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter sp. NAS-14.1.;"
putative glycosyltransferase protein
|
|
SCNpilot_expt_1000_bf_scaffold_7192_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
13366..14355
|
Thioredoxin reductase TrxB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVL1_9RHIZ
rbh
Thioredoxin reductase {ECO:0000256|RuleBase:RU003881}; EC=1.8.1.9 {ECO:0000256|RuleBase:RU003881};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
|
|
SCNpilot_expt_1000_bf_scaffold_7192_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
14702..15376
|
Transcriptional regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ET00_9RHIZ
rbh
Transcriptional regulator {ECO:0000313|EMBL:EYR79046.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
yafC3; HTH-type transcriptional regulator YafC
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_7192_curated_15
unknown
|
Not on your lists |
comp(15292..15459)
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_7192_curated_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
15879..16184
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C6Y0_9RHIZ
Putative transcriptional regulator {ECO:0000313|EMBL:EYR79043.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_7192_curated_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
16221..17330
|
N-ethylmaleimide reductase NemA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EPM2_9RHIZ
rbh
N-ethylmaleimide reductase NemA {ECO:0000313|EMBL:EYR79042.1}; EC=1.-.-.- {ECO:0000313|EMBL:EYR79042.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
|
|
SCNpilot_expt_1000_bf_scaffold_7192_curated_18
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
17437..17760
|
Sodium/calcium exchanger membrane region n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HIF2_9RHIZ
Sodium/calcium exchanger membrane region {ECO:0000313|EMBL:EPE97850.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
chaA; LPS-associated cation exporter (Ca2+/H+ antiporter) protein; K07300 Ca2+:H+ antiporter
|