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SCNpilot_expt_1000_bf_scaffold_3001_curated_4

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(2122..4326)

Top 3 Functional Annotations

Value Algorithm Source
Ribonucleoside-diphosphate reductase {ECO:0000256|RuleBase:RU003410}; EC=1.17.4.1 {ECO:0000256|RuleBase:RU003410};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 91.7
  • Coverage: 712.0
  • Bit_score: 1326
  • Evalue 0.0
ribonucleoside-diphosphate reductase, alpha subunit similarity KEGG
DB: KEGG
  • Identity: 88.8
  • Coverage: 734.0
  • Bit_score: 1309
  • Evalue 0.0
  • rbh
Ribonucleoside-diphosphate reductase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LV79_RHITR similarity UNIREF
DB: UNIREF100
  • Identity: 88.8
  • Coverage: 734.0
  • Bit_score: 1309
  • Evalue 0.0
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2205
ATGAACACCCCGACGCCCCGGGACGCGAGCGAAAAAACGCCTCACGCGTTTCCTCATCCCGTGGCAGACAAGCCGGCGAAGGCCCCGGAAATCACGGCGCTGGATTACCACGCGCTGAACGCGATGCTGAACCTCTACGACGACGAGGGGAAGATCCAGCTCGACAGGGACCGGCAGGCCGCCAAGCAATATTTCCTCCAGCACGTCAACCAGAACACGGTCTTCTTCCATAACCTCAGGGAGAAGCTCGATTACCTGGTGACCGAGGGTTATTACGAGCAGGAGGTGCTGGATCAGTATTCCTTCAATTTCGTGCGCGATCTCTTCGACCACGCCTATGACAGGAAATTCCGCTTTCCCACCTTCCTCGGCGCGTTCAAGTACTACACGTCCTATACGCTGAAGACCTTCGACGGAAAGCGCTACCTGGAGCGCTACGAGGACCGGGTCTGCATGGTGGCGCTGGCGCTGGCGCGCGGCAGCGAGCAGCTTGCCCGCGAGCTCGTCGACGAGATCATCTCTGGCCGTTTCCAGCCGGCGACGCCCACCTTTCTCAACGCCGGCAAGAAGCAGCGCGGCGAGCTCGTCTCCTGCTTCCTGCTGCGCGTCGAGGACAACATGGAGAGCATCGGCCGCTCGATCAATTCGGCCCTCCAGCTTTCCAAGCGCGGCGGTGGCGTCGCGCTGTCGCTCACCAACCTTCGCGAGATGGGCGCGCCGATCAAGCAGATCGAGAACCAGTCGTCCGGCGTCATCCCCGTGATGAAGCTGCTGGAGGACAGTTTCTCCTACGCCAACCAGCTCGGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCATCCCGACATCATGCGCTTCCTCGACACCAAGCGCGAGAATGCCGACGAGAAGATCCGCATCAAGACGCTCTCCCTCGGCGTCGTCATCCCCGACATCACCTTCGAGCTCGCCAGGAACAACGAGGACATGTACCTGTTCTCGCCGCATGACGTGGAGCGCGTCTACGGCGTGCCCTTCACCGAGATCTCGGTGAGCGAGAAGTACCGCGAGATGGTCGAGGACGGGCGCATCCGCAAGAAGAAGATCAAGGCGCGCGACTTCTTCCAGGTCATCGCCGAGATCCAGTTCGAGAGCGGCTATCCCTACATCATGTTCGAGGACACGGTGAACCGGGAAAACCCCATCGCCGGCCGCATCTCCATGAGCAATCTCTGCTCGGAGATCCTCCAGGTGAGCGAGGCGAGCGAGTTCAACGACGACCTCTCCTATGCGAAGATGGGCAAGGACATCTCCTGCAACCTCGGTTCGCTCAACATCGCCGCCGCGATGGACAGCCCCGATTTCGGCCAGACCATCGAGACCTCGATCCGCGCGCTGACGGCGGTCTCGGAGATGAGCCACATCTCCTCGGTCCCCTCGATCGAGAAGGGCAACGACGACAGCCACGCCATCGGCCTCGGCCAGATGAACCTGCACGGCTATCTCGCCCGCGAGCGCATCTTCTATGGTTCGCAAGAGGGTGTCGATTTCACCAATATCTACTTCTACACGGTGACCTACCACGCCGTCCGCGCTTCCAACCGGCTGGCGGTGGAGAAGGCAAAGAGCTTCAAGGGCTTCGAGAATTCGAAATACGCCTCCGGCGAGTATTTCGACAAATACACCGAGCGGGAATGGCTGCCGGCGACGGAGAGGGTCAAGGCCCTTTTCGAGGCGGCGGGCATCGACATCCCGACGCAGGAGGACTGGCGCGCGCTGAAGGCCGCCGTCATGGAAGGCGGGCTCTACAACCAGAACCTCCAGGCCGTGCCGCCGACCGGCTCGATCTCCTACATCAACCACTCGACCTCCTCGATCCACCCGATCGTCTCGAAGATCGAGATCCGGAAAGAAGGCAAGATCGGCCGCGTCTACTATCCGGCCGCCTTCATGACCAACGACAATCTCGACTATTACCAGGATGCCTACGAGATCGGCCCGGAGAAGATCATCGACACCTATGCGGCGGCCACGCAGCACGTCGACCAGGGCCTGTCGCTGACGCTGTTCTTCCGCGACACCGCGACGACCCGCGACATCAACCGGGCGCAGATCTACGCCTGGAAGAAGGGCATCAAGACCATCTACTACATCCGCCTTCGCCAGATGGCGCTGTCCGGCACGGAAGTGCAGGGCTGCGTCTCCTGCGCCCTCTGA
PROTEIN sequence
Length: 735
MNTPTPRDASEKTPHAFPHPVADKPAKAPEITALDYHALNAMLNLYDDEGKIQLDRDRQAAKQYFLQHVNQNTVFFHNLREKLDYLVTEGYYEQEVLDQYSFNFVRDLFDHAYDRKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALALARGSEQLARELVDEIISGRFQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSALQLSKRGGGVALSLTNLREMGAPIKQIENQSSGVIPVMKLLEDSFSYANQLGXXXXXXXXXXXXXHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPHDVERVYGVPFTEISVSEKYREMVEDGRIRKKKIKARDFFQVIAEIQFESGYPYIMFEDTVNRENPIAGRISMSNLCSEILQVSEASEFNDDLSYAKMGKDISCNLGSLNIAAAMDSPDFGQTIETSIRALTAVSEMSHISSVPSIEKGNDDSHAIGLGQMNLHGYLARERIFYGSQEGVDFTNIYFYTVTYHAVRASNRLAVEKAKSFKGFENSKYASGEYFDKYTEREWLPATERVKALFEAAGIDIPTQEDWRALKAAVMEGGLYNQNLQAVPPTGSISYINHSTSSIHPIVSKIEIRKEGKIGRVYYPAAFMTNDNLDYYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIYYIRLRQMALSGTEVQGCVSCAL*