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SCNpilot_expt_1000_bf_scaffold_3001_curated

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3001_curated_1
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..417
DNA (417bp) protein (139aa)
50S ribosomal protein L3 glutamine methyltransferase PrmB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C0S9_9RHIZ
Protein-(Glutamine-N5) methyltransferase, ribosomal protein L3-specific {ECO:0000313|EMBL:EUB96976.1}; EC=2.1.1.72 {ECO:0000313|EMBL:EUB96976.1};; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
prmB; N5-glutamine methyltransferase; K07320 putative adenine-specific DNA-methyltransferase [EC:2.1.1.72]
SCNpilot_expt_1000_bf_scaffold_3001_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

493..1131
DNA (639bp) protein (213aa)
Phosphotransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D1N5_9RHIZ
Phosphotransferase {ECO:0000313|EMBL:EYR82545.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
phosphoglycerate mutase (EC:5.4.2.1)
SCNpilot_expt_1000_bf_scaffold_3001_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1137..2108)
DNA (972bp) protein (324aa)
Ribonucleoside-diphosphate reductase subunit beta {ECO:0000256|PIRNR:PIRNR000355}; EC=1.17.4.1 {ECO:0000256|PIRNR:PIRNR000355};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ribonucleotide-diphosphate reductase subunit beta n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI0003793D05
ribonucleoside-diphosphate reductase subunit beta; K00526 ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
SCNpilot_expt_1000_bf_scaffold_3001_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2122..4326)
DNA (2205bp) protein (735aa)
Ribonucleoside-diphosphate reductase {ECO:0000256|RuleBase:RU003410}; EC=1.17.4.1 {ECO:0000256|RuleBase:RU003410};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ribonucleoside-diphosphate reductase, alpha subunit rbh
Ribonucleoside-diphosphate reductase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LV79_RHITR rbh
SCNpilot_expt_1000_bf_scaffold_3001_curated_5
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4323..4724)
DNA (402bp) protein (134aa)
Protein NrdI n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4FBT9_9RHIZ
Protein NrdI {ECO:0000256|HAMAP-Rule:MF_00128, ECO:0000256|SAAS:SAAS00020464}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
nrdI; protein that stimulates ribonucleotide reduction
SCNpilot_expt_1000_bf_scaffold_3001_curated_6
unknown

Not on your lists

5035..5676
DNA (642bp) protein (214aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3001_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5673..6134
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ET50_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR78626.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
calcium or iron-binding protein
SCNpilot_expt_1000_bf_scaffold_3001_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6144..7079)
DNA (936bp) protein (312aa)
Protease n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CBC1_9RHIZ rbh
Protease {ECO:0000313|EMBL:EYR78625.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative protease rbh
SCNpilot_expt_1000_bf_scaffold_3001_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7088..8065)
DNA (978bp) protein (326aa)
Protease n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CR85_9RHIZ rbh
Protease {ECO:0000313|EMBL:EYR78624.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
yhbU; protease YhbU (EC:3.4.-.-) rbh
SCNpilot_expt_1000_bf_scaffold_3001_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8056..8583)
DNA (528bp) protein (176aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D086_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR78623.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative lipid carrier protein-like protein
SCNpilot_expt_1000_bf_scaffold_3001_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8779..10152
DNA (1374bp) protein (458aa)
3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD {ECO:0000313|EMBL:EYR78622.1}; EC=4.1.1.- {ECO:0000313|EMBL:EYR78622.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00035D56B3 rbh
ubiD; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; K03182 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD [EC:4.1.1.-] rbh
SCNpilot_expt_1000_bf_scaffold_3001_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10149..10736
DNA (588bp) protein (196aa)
3-octaprenyl-4-hydroxybenzoate carboxy-lyase partner protein UbiX n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CAD1_9RHIZ rbh
Aromatic acid decarboxylase {ECO:0000256|RuleBase:RU362054}; EC=4.1.1.- {ECO:0000256|RuleBase:RU362054};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
bsdB; phenolic acid decarboxylase subunit B (EC:4.1.1.- 4.1.1.61)
SCNpilot_expt_1000_bf_scaffold_3001_curated_13
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11254..11628
DNA (375bp) protein (125aa)
putative glutathione S-transferase YghU; K11209 GST-like protein
Glutathione S-transferase n=1 Tax=Rhodobacter sp. AKP1 RepID=L1K8F7_9RHOB
Rhodobacter sphaeroides 2.4.1 chromosome 2, complete sequence {ECO:0000313|EMBL:ABA81338.1}; TaxID=272943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM; 158).;"
SCNpilot_expt_1000_bf_scaffold_3001_curated_14
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11639..12016
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF142 RepID=J1SHL9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJJ24738.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3001_curated_15
unknown

Not on your lists

comp(12762..13100)
DNA (339bp) protein (113aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3001_curated_16
unknown

Not on your lists

comp(13122..13490)
DNA (369bp) protein (123aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3001_curated_17
unknown

Not on your lists

comp(13860..14048)
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3001_curated_18
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14314..14583
DNA (270bp) protein (90aa)
ABC transporter n=1 Tax=Rhizobium giardinii RepID=UPI000370E1C9
Sugar ABC transporter permease protein {ECO:0000313|EMBL:AJD44196.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
putative sugar ABC transporter, permease protein
SCNpilot_expt_1000_bf_scaffold_3001_curated_19
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14612..15652
DNA (1041bp) protein (347aa)
putative sugar ABC transporter, substrate-binding protein rbh
Putative sugar ABC transporter, substrate-binding protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LYV9_RHITR rbh
Putative sugar ABC transporter, substrate-binding protein {ECO:0000313|EMBL:EMS95466.1}; TaxID=1281779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens str. Cherry 2E-2-2.;"
SCNpilot_expt_1000_bf_scaffold_3001_curated_20
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15708..16931
DNA (1224bp) protein (408aa)
LVIVD repeat domain-containing protein rbh
LVIVD repeat domain-containing protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LX54_RHITR rbh
LVIVD repeat domain-containing protein {ECO:0000313|EMBL:AGB75291.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_3001_curated_21
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16944..18023)
DNA (1080bp) protein (360aa)
sn-glycerol-3-phosphate import ATP-binding protein UgpC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EUG2_9RHIZ rbh
sn-glycerol-3-phosphate import ATP-binding protein UgpC {ECO:0000313|EMBL:EYR77482.1}; EC=3.6.3.20 {ECO:0000313|EMBL:EYR77482.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative ATP-binding component of ABC transporter; K02023 multiple sugar transport system ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_3001_curated_22
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18035..18868)
DNA (834bp) protein (278aa)
Trehalose/maltose transport system permease protein MalG n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CX65_9RHIZ rbh
Trehalose/maltose transport system permease protein MalG {ECO:0000313|EMBL:EYR77483.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
sugar ABC transporter permease; K02026 multiple sugar transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_3001_curated_23
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18873..19796)
DNA (924bp) protein (308aa)
Binding-protein-dependent transport system inner membrane protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D1R3_9RHIZ rbh
ABC-type sugar transport system permease component {ECO:0000313|EMBL:EYR77484.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter; K02025 multiple sugar transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_3001_curated_24
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19879..21138)
DNA (1260bp) protein (420aa)
Putative binding protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CSR4_9RHIZ rbh
Putative binding protein {ECO:0000313|EMBL:EYR77485.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter, substrate binding protein (Sugar) rbh
SCNpilot_expt_1000_bf_scaffold_3001_curated_25
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21177..22349)
DNA (1173bp) protein (391aa)
Methionine gamma-lyase MdeA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CCV0_9RHIZ rbh
Methionine gamma-lyase MdeA {ECO:0000313|EMBL:EYR77486.1}; EC=4.4.1.11 {ECO:0000313|EMBL:EYR77486.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_3001_curated_26
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22346..23068)
DNA (723bp) protein (241aa)
GntR domain-containing protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EUG5_9RHIZ rbh
GntR domain-containing protein {ECO:0000313|EMBL:EYR77487.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
GntR family transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_3001_curated_27
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23385..24275)
DNA (891bp) protein (297aa)
Putative 3-hydroxyisobutyrate dehydrogenase MmsB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CGZ6_9RHIZ rbh
3-hydroxyisobutyrate dehydrogenase {ECO:0000256|RuleBase:RU910714}; Short=HIBADH {ECO:0000256|RuleBase:RU910714};; EC=1.1.1.31 {ECO:0000256|RuleBase:RU910714};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
mmsB; 3-hydroxyisobutyrate dehydrogenase; K00020 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] rbh
SCNpilot_expt_1000_bf_scaffold_3001_curated_28
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24272..25321)
DNA (1050bp) protein (350aa)
3-hydroxyisobutyryl-CoA hydrolase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CR76_9RHIZ rbh
3-hydroxyisobutyryl-CoA hydrolase {ECO:0000313|EMBL:EYR81491.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
3-hydroxyisobutyryl-CoA hydrolase; K01692 enoyl-CoA hydratase [EC:4.2.1.17] rbh
SCNpilot_expt_1000_bf_scaffold_3001_curated_29
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25305..25544)
DNA (240bp) protein (80aa)
Dihydrolipoyl dehydrogenase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6TYB1_9RHIZ
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
dihydrolipoamide dehydrogenase (EC:1.8.1.4); K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4]
SCNpilot_expt_1000_bf_scaffold_3001_curated_30
unknown

Not on your lists

25791..26144
DNA (354bp) protein (118aa)

This feature has no annotations

Displaying items 1-30 of 44 in total

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