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SCNpilot_expt_1000_bf_scaffold_3001_curated_11

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 8779..10152

Top 3 Functional Annotations

Value Algorithm Source
3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD {ECO:0000313|EMBL:EYR78622.1}; EC=4.1.1.- {ECO:0000313|EMBL:EYR78622.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 87.3
  • Coverage: 457.0
  • Bit_score: 835
  • Evalue 3.30e-239
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00035D56B3 similarity UNIREF
DB: UNIREF100
  • Identity: 79.7
  • Coverage: 453.0
  • Bit_score: 762
  • Evalue 2.50e-217
  • rbh
ubiD; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; K03182 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD [EC:4.1.1.-] similarity KEGG
DB: KEGG
  • Identity: 76.3
  • Coverage: 456.0
  • Bit_score: 728
  • Evalue 1.70e-207
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1374
GTGCTGGCCGAGGAAGGGCCGGCGCTGCTTTTCGAGCGGCCGGTCGATGCGGCGGGCAATATCCAGCCGATCCCGCTCCTTGCCAATCTCTTCGGCACGCGCGAGCGCATCGAGTGGGGGCTCGGGCTGGAGGCCGGCGGCCTGCCGCACCTGGCCGGCTTCCTTGCGGACCTGCGCGATCCGCGGCCGCCGCGCTCGCTGCGCGACGCCTGGGGAAAGCTGCCGCATCTGAAGGCCGCGCTCTCGATGAACCCGCGCGAGACGCGGCGTCCGCCCTGCCAGGAGATCGTCTGGCGCGGCGGCGACATCGATCTGGGCCGCCTCCCCATCCAGACCTGCTGGCCGGGCGAACCTGCGCCGCTCGTCACCTGGCCGCTCGTCATCACCCGCGCGCCGGACGATCCATCGGATGTCAATGTCGGCATCTACCGCATGCAGAAGCTCGGCCGCGACCGGCTGGTCATGCGCTGGCTGGCGCATCGCGGCGGGGCGCGGCACCACCGGCTCTGGCAGGCGCTCGGGCGCGACATGCCCGTCGCGGTGGTCATCGGCGCCGATCCCGCGACGATCCTGTCGGCCGTGATGCCGCTGCCCGACGGCATGAGCGAGCTTGCCTTCGCCGGCGTTCTCGGCGGCCGGCGGCAGGAAACGGCAAGCGGCGTCACCGTCCCCCCCCCCGTGCCCGCCGGCGCGGAGATCGTGCTGGAGGGCATGGTCTCGGCAAGCGAGACGGCGGACGAAGGTCCTTACGGCGACCATACCGGCTACTACAACGCCGTCGAGCCCTTCCCGGTCCTGACGCTTTCGGCGATCACCATGCGTCGGAGCCCGCTCTATCTCTCCACCTATACCGGCCGCCCGCCGGACGAGCCGTCGCGGCTCGGCGAGGCGATGAACGAGCTCTTCGTGCCGCTGGTGAAGCGGCAGTTCCCCGAGATCCGCGACCTCTGGCTGCCGCCCGAGGCCTGTTCCTACCGGGCGATGGTCGTCTCCATCGACAAGCGCTATCCCGGCCAGGCGCGGCGCATCATGATGGGCCTGTGGTCGATGCTGCCGCAGTTCAACTACACCAAGCTGATCATCGCGGTGGACGGCGACATCGACGTCCGGAGCTGGCCGGACGTGATGTGGGCGCTCTCCACCCGCTTCGACGCGAGCCGCGACCTGATGGTGGTGGAGAACACGCCCATCGACTATCTCGATTTCGCCTCGCCGAAATCCGGCCTCGGCGGCAAGCTGGGGCTCGACGCGACGACCAAGATCGGCACCGAGACGGACCGCGAATGGGGCCGGGTGCTGGCGATGACGCCTGACGTGACCGCCCGCGTCGACGGCCTGTGGGCGTCCCTGGGCCTTGCCGGAGATTCGACATGA
PROTEIN sequence
Length: 458
VLAEEGPALLFERPVDAAGNIQPIPLLANLFGTRERIEWGLGLEAGGLPHLAGFLADLRDPRPPRSLRDAWGKLPHLKAALSMNPRETRRPPCQEIVWRGGDIDLGRLPIQTCWPGEPAPLVTWPLVITRAPDDPSDVNVGIYRMQKLGRDRLVMRWLAHRGGARHHRLWQALGRDMPVAVVIGADPATILSAVMPLPDGMSELAFAGVLGGRRQETASGVTVPPPVPAGAEIVLEGMVSASETADEGPYGDHTGYYNAVEPFPVLTLSAITMRRSPLYLSTYTGRPPDEPSRLGEAMNELFVPLVKRQFPEIRDLWLPPEACSYRAMVVSIDKRYPGQARRIMMGLWSMLPQFNYTKLIIAVDGDIDVRSWPDVMWALSTRFDASRDLMVVENTPIDYLDFASPKSGLGGKLGLDATTKIGTETDREWGRVLAMTPDVTARVDGLWASLGLAGDST*