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SCNpilot_expt_1000_bf_scaffold_3001_curated_21

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(16944..18023)

Top 3 Functional Annotations

Value Algorithm Source
sn-glycerol-3-phosphate import ATP-binding protein UgpC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EUG2_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 88.7
  • Coverage: 355.0
  • Bit_score: 625
  • Evalue 3.80e-176
  • rbh
sn-glycerol-3-phosphate import ATP-binding protein UgpC {ECO:0000313|EMBL:EYR77482.1}; EC=3.6.3.20 {ECO:0000313|EMBL:EYR77482.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 88.7
  • Coverage: 355.0
  • Bit_score: 625
  • Evalue 5.30e-176
putative ATP-binding component of ABC transporter; K02023 multiple sugar transport system ATP-binding protein similarity KEGG
DB: KEGG
  • Identity: 77.0
  • Coverage: 356.0
  • Bit_score: 530
  • Evalue 3.10e-148
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1080
ATGGCTTCCATCGATATCGAGGGCATCCGCAAGAGCTTCGGCGCCTTTCCCGTACTGCACGGCGTCGACCTCACCATCAGGGACGGCGAGTTCATCGTGCTGGTCGGCCCCTCCGGCTGCGGAAAATCGACGCTGCTGCGCATGATCGCCGGCCTTGAGGAGGTCACGGCCGGCGACATCCGCATCGACGGCAAGCGCGTCAACGATCTTGCCCCCAAGGACCGCGACATCGCCATGGTGTTCCAGTCCTACGCGCTCTATCCGCATATGAGCGTTGCCGACAACATGAGCTACAGTCTGCGCCTGCGCCGCTCCACCAAGGAGAAGATCGCCAGCGCCGTCAGCGGCGCGGCCGCGAAGCTCGGGCTCGACCCGCTCCTTGAGCGCCGCCCGCGCGCCCTTTCCGGCGGCCAGCGCCAGCGCGTCGCCATGGGCCGCGCCATCGTGCGCCAGCCGAAGGCCTTTCTCTTCGACGAGCCGCTGTCGAACCTCGATGCGCGCCTGCGCGAGCAGATGCGCGCCGAAATCAAGAAACTGCACGGCGACCTGCGCGCCACCTCCATCTACGTGACGCACGACCAGATCGAGGCCATGACGCTCGCCGACCGCATCGTCGCCATGCATGGTGGCGTGGTACAGCAGGTCGGCTCGCCGCTCGACCTCTACGACCGCCCCGCCAACCTCTTCGTCGCGGGCTTCATCGGCTCGCCCGGCATGAACTTCTTCGAGGGGCGCTATATCGTTTCCGGCGACCGGGCCGACCTGCGGCTCGCAAACGGCGTGATGCTGCCCGTCCGCAGGATGGCGGGCATCGAAAGCGGCGCGGCGGCAACGCTCGGCATCCGCCCGGAACATGTGGCGATCGCCGGGGGCGGTGCGCTGGAGGCCAAGGTCGACCTCATCGAGCCGACCGGCTTCGGCATCATCATGCATGTGAGCGTGCACGACGTGCCGCTGAAGATCTTCACGCTCGACCGCGCCATGCTCACCCCCGGCGCGACGGTGCGCATCGACCTGCCGCAGGAGAGCCTTCACCTCTTCGACGAGGAAGGGCGGCGCCTCGACCGGCCGCCCGCATGA
PROTEIN sequence
Length: 360
MASIDIEGIRKSFGAFPVLHGVDLTIRDGEFIVLVGPSGCGKSTLLRMIAGLEEVTAGDIRIDGKRVNDLAPKDRDIAMVFQSYALYPHMSVADNMSYSLRLRRSTKEKIASAVSGAAAKLGLDPLLERRPRALSGGQRQRVAMGRAIVRQPKAFLFDEPLSNLDARLREQMRAEIKKLHGDLRATSIYVTHDQIEAMTLADRIVAMHGGVVQQVGSPLDLYDRPANLFVAGFIGSPGMNFFEGRYIVSGDRADLRLANGVMLPVRRMAGIESGAAATLGIRPEHVAIAGGGALEAKVDLIEPTGFGIIMHVSVHDVPLKIFTLDRAMLTPGATVRIDLPQESLHLFDEEGRRLDRPPA*