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SCNpilot_expt_1000_bf_scaffold_3001_curated_18

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 14314..14583

Top 3 Functional Annotations

Value Algorithm Source
ABC transporter n=1 Tax=Rhizobium giardinii RepID=UPI000370E1C9 similarity UNIREF
DB: UNIREF100
  • Identity: 93.0
  • Coverage: 86.0
  • Bit_score: 158
  • Evalue 3.30e-36
Sugar ABC transporter permease protein {ECO:0000313|EMBL:AJD44196.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 92.0
  • Coverage: 88.0
  • Bit_score: 158
  • Evalue 3.50e-36
putative sugar ABC transporter, permease protein similarity KEGG
DB: KEGG
  • Identity: 88.6
  • Coverage: 88.0
  • Bit_score: 157
  • Evalue 1.80e-36

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Taxonomy

Rhizobium gallicum → Rhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 270
GTGGTGGCCGCCCGCGTCGGCCGCGGCGACGTCTCCTCCGGCGCGTCGCTCCTGATGGATTCGGTCGCCGCCGCGCTGATCGGCTTTGCCGTGCTCGGCCTGCGCCGGCCCAACGTCTTCGGCACCATCGTCGGCGCGGTCTTCGTCGGGGTGCTGCTGAACGGCCTGACCATGCTGAACGCGCCCTACTACGCGCAGGATTTCGTCAAGGGCGCCGTCTTGGTCGGCGCGCTGGCGCTGACCTATGGCGTTGCCCGCGGGCGACGCTGA
PROTEIN sequence
Length: 90
VVAARVGRGDVSSGASLLMDSVAAALIGFAVLGLRRPNVFGTIVGAVFVGVLLNGLTMLNAPYYAQDFVKGAVLVGALALTYGVARGRR*