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SCNpilot_expt_1000_bf_scaffold_3001_curated_24

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(19879..21138)

Top 3 Functional Annotations

Value Algorithm Source
Putative binding protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CSR4_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 97.4
  • Coverage: 419.0
  • Bit_score: 835
  • Evalue 2.80e-239
  • rbh
Putative binding protein {ECO:0000313|EMBL:EYR77485.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 97.4
  • Coverage: 419.0
  • Bit_score: 835
  • Evalue 3.90e-239
ABC transporter, substrate binding protein (Sugar) similarity KEGG
DB: KEGG
  • Identity: 87.6
  • Coverage: 419.0
  • Bit_score: 767
  • Evalue 2.30e-219
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1260
ATGAAAAGACTTCTGACTGCGGCGCTTCTCACCACGCTGATGGCTTCCAGCGCGCTGGCCGATACCACGCTGAAGCTCGTCGAGGTGATCACCAGCCCCGAGCGCACGGAAACGCTGAAATCCATCGTCGGCAAGTTCGAGGCGGCCAATCCCGGCACCAAGGTCGAGATCATCTCGCTGCCCTGGGGCGAGGCGTTCCAGAAATTCGCGACCATGGTCTCGGCCGGCGAGGTGCCGGATGTCATGGAAATGCCCGACACTTGGCTGTCGCTCTACGCCAATAACGGCATGCTGGAGAGCCTGGAGCCCTATCTCGAAAAATGGGAATACACGCCGGGCCTGACGGCACGCGCCCTGGAACTCGGCCGCGACATCAAGAACACGGCCTACATGCTGCCCTACGGCTTCTATCTTCGCGCCATGTTCTACAACAAGAAGCTGCTGGCCGAGGCCGGCGTTTCCGAGCCGCCGAAGACGCTCGACGAATTCGCCGAAGCCTCAAAGAAGGTCTCGGCCCTGCCGGGCAAGTACGGCTATTGCCTTCGCGGCGGGCCGGGCGGCCTCAACGGCTGGGTGATGTTCGGCGCCTCCATGGCCGGCTCCAACAAGTTCTTCAACGAGGACGGCACCTCCACCTTCAACAGCGAGGGCTGGGTCAAGGGCCTCACCTTCCTGATCGACCTCTACAAGAACGGCTACGCGCCGAAGGACAGCGTCAACTGGGGCTTCAACGAGATCGTCGCGGGCTTCTATTCCGGCACCTGCGCCTTCCTCGACCAGGACCCGGATGCGCTGATCGCCATCGCCGAGCGCATGAAGGCGGAAGACTACGGCATCATGACCATGCCGAAGGGCCCGGACGGCAAGACCTTCCCGACCATCGGTTTTGCCGGCTGGTCGATGTTCGCCTCCAGCGCCAACAAGGACCTGTCCTGGAAGCTGATCGAGACGCTCGAAGGGCCGGAAGGCAATATCGAGTGGAACAAGCGCACGGGCGCGCTGCCGGTGCACACGTCGGCTGAGAAGGATCCGTTCTATTCGAGCGAGCAGTTCAAGGGCTGGTTCGCCGAGCTTGAGGACAAGGATGCCGTGCCGACCGTGATGCCGACGCATCTGGAGGAATTCGCCTTCTTCAAGGATTCGCTTGTCATCAAGACCTCGCAGGAGGCCCTTCTCGGCGACATCACGCCGGAAGACCTCGCCAACCAGTGGGCAGACTACCTGACCAAGGCGCAGCAGAAGTTCCTGGCGAAGCAATAA
PROTEIN sequence
Length: 420
MKRLLTAALLTTLMASSALADTTLKLVEVITSPERTETLKSIVGKFEAANPGTKVEIISLPWGEAFQKFATMVSAGEVPDVMEMPDTWLSLYANNGMLESLEPYLEKWEYTPGLTARALELGRDIKNTAYMLPYGFYLRAMFYNKKLLAEAGVSEPPKTLDEFAEASKKVSALPGKYGYCLRGGPGGLNGWVMFGASMAGSNKFFNEDGTSTFNSEGWVKGLTFLIDLYKNGYAPKDSVNWGFNEIVAGFYSGTCAFLDQDPDALIAIAERMKAEDYGIMTMPKGPDGKTFPTIGFAGWSMFASSANKDLSWKLIETLEGPEGNIEWNKRTGALPVHTSAEKDPFYSSEQFKGWFAELEDKDAVPTVMPTHLEEFAFFKDSLVIKTSQEALLGDITPEDLANQWADYLTKAQQKFLAKQ*