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SCNpilot_expt_1000_bf_scaffold_3001_curated_27

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(23385..24275)

Top 3 Functional Annotations

Value Algorithm Source
Putative 3-hydroxyisobutyrate dehydrogenase MmsB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CGZ6_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 88.3
  • Coverage: 291.0
  • Bit_score: 512
  • Evalue 2.90e-142
  • rbh
3-hydroxyisobutyrate dehydrogenase {ECO:0000256|RuleBase:RU910714}; Short=HIBADH {ECO:0000256|RuleBase:RU910714};; EC=1.1.1.31 {ECO:0000256|RuleBase:RU910714};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 88.3
  • Coverage: 291.0
  • Bit_score: 512
  • Evalue 4.10e-142
mmsB; 3-hydroxyisobutyrate dehydrogenase; K00020 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] similarity KEGG
DB: KEGG
  • Identity: 72.8
  • Coverage: 294.0
  • Bit_score: 427
  • Evalue 3.90e-117
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 891
ATGAGCTCCATCGCATTCATCGGCCTCGGCCATATGGGCGGCCCGATGGCCGCAAATCTCGTGAAGGCCGGCCATGCCGTGCGCGGCTTCGACCTTTCCGCCGCCTCGCTCGACCTGGCGCGGGAAAACGGCGTGGCGACCGTCGCCTCCATCGGCGAGGCGATTTCCGGCGCGGATCTCGTCATCACCATGCTGCCGGCCGGAACGCATGTGCTTTCGGTGTGGCAGGAACTGGTGGCCACCGTGCCGTCAGGCACGCTGCTCATCGATTGCTCCACCATCGACATGGCGAGCGCCCGCAAGGCCCATGCGCTGGCCGAGGCGCATGGCTGTCCGGCGCTCGACGCGCCCGTCTCGGGCGGCACCGGGGGCGCCTCGGCCGGCACGCTCACCTTCATGGTGGGGGGCGAGGCCGGGGCCTTTGCCGGGGCAAAGCCGGTCTTCGAGGCGATGGGCCGGAAGATCATCCATTGCGGCGGCGCCTCCGCCGGCCAGGCAGCGAAGATCTGCAACAACATGATCCTCGGCATCAGCATGATCGCCGTGGGCGAGGCCTTCGTGCTGGGCGAACGGCTCGGCCTCTCGCATCAGGCACTGTTCGACGTCGCCTCGGTCTCGTCGGGGCAATGCTGGTCGCTGACCACCTATTGCCCGGTGCCGGGGCCCGTCCCCACCTCGCCCGCCAACCACGATTACGAACCGGGCTTTGCCGCGGCGCTGATGCTCAAGGACCTGAAGCTGTCGCAGGCGGCGGCGGAGGACACCGGTGCCACGACCCCGCTCGGCGCCAAGGCGGCCGCGCTCTATCAGCGCTTCGCGGACGAGGGGCTTGGCGAAAAGGACTTCTCCGCCATCATCGCCATGCTGCGGGACGGACCGTCCGCCGGCTAG
PROTEIN sequence
Length: 297
MSSIAFIGLGHMGGPMAANLVKAGHAVRGFDLSAASLDLARENGVATVASIGEAISGADLVITMLPAGTHVLSVWQELVATVPSGTLLIDCSTIDMASARKAHALAEAHGCPALDAPVSGGTGGASAGTLTFMVGGEAGAFAGAKPVFEAMGRKIIHCGGASAGQAAKICNNMILGISMIAVGEAFVLGERLGLSHQALFDVASVSSGQCWSLTTYCPVPGPVPTSPANHDYEPGFAAALMLKDLKLSQAAAEDTGATTPLGAKAAALYQRFADEGLGEKDFSAIIAMLRDGPSAG*