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SCNpilot_expt_1000_bf_scaffold_4531_curated_4

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(2685..3890)

Top 3 Functional Annotations

Value Algorithm Source
Strain MEJ076 contig_8, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ03461.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 43.2
  • Coverage: 403.0
  • Bit_score: 327
  • Evalue 3.30e-86
TonB-dependent receptor similarity KEGG
DB: KEGG
  • Identity: 41.6
  • Coverage: 399.0
  • Bit_score: 313
  • Evalue 1.10e-82
  • rbh
TonB-dependent receptor n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I548_RHOVT similarity UNIREF
DB: UNIREF100
  • Identity: 41.6
  • Coverage: 399.0
  • Bit_score: 313
  • Evalue 3.60e-82
  • rbh

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Taxonomy

Agrobacterium tumefaciens → Agrobacterium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1206
GTGAGACCGATCGTTTCCTCGTTCACCTGCCCTCCGGGCGACACCACCTGCTCTTACGAGCAATACGCCAATCGCAGGAGCGTCATCCCTGCATACCATAACAAGGCGGCGATCAATTCCCTCGACATGTATGCCGAAGCCGACCAAACATGGGGCTGGCTGAATGTCAGGGCGGGCGTTCACCTCAGCTACGAGGATTTCTTCGGAAACCTCAATCTTGCTCCAAGACTGACGGCTACGGTTTCACCCACCGAGGATTTGGCATTCGTTGCGGGCTTCAATCGCTACTACAATGCGAATTCGGTCTACTATGCGATCCGAGATGGTCAGCCGTTGGGGCTTACATACACGCGGTCACACAATTCGTCGGGCGCGATTACCAACTGGAGTACGGCGCAATCGCAGGTTTACTATACGTTTTCGGGTCTCGATCTGGTAACGCCCTACAATGACGAGTTCACGGCTGCCGTCAAATGGACGGATCCGTGGCTGGATGGGGATCTGCGCGTGCGCTATCTCCTTCGGCAGGGCAAGGATCAGTATCTGAAGTCACCCGACTCCACAGGCCGCGTCATGGCACTCACCAATGACGGGGACTCGCAGTACCAGTCGGCCAGCATCGAATACGGCAAGACATGGGCGGTGAACGAAGGGCACATGGACACCGTCCGCCTGTCGGGTAGCCTTACATGGTCCAAGCAGCGCACGACCTCGAACGGCTATTTCGACGACCCGACCGATACCCGTATCTGGTACAACGACGCTTCCTATTCACTCGGTGAATTCGCCATGGCGACGGGAAACATGGACATTCCGGTCAGGACCTCCGTCGATCTGGTGACGACCTTTCTCGACGAGCGGCTGACCGTGGGTCTTTCGGGAAACCTCAACTTCTCCTATGACGGCGCCCGCGCGACGGACACGACCTGCACGCCCTCGACGAGCGCTGCCGCGAAATGCCAGTTGCCGGCCGGTTCGGAAGGCTTGGGCATGCTCCACGACATATACGAGGACTTCCATTTCAGGCCCGTCGCGACGTTCGACCTCAACACGACGTACAAGGCCGTGGAATCCGAGTACGGGTCGCTTGAATTCGAAATGAAGGTCCAGAACATGTTCAACGAAACCGGCAACAAGATTTCCACGGCGACGCAGCCCTGGATTCCCGGCCGGAGCATCTGGTTAGGCGCCAAGGCGACGTTCTGA
PROTEIN sequence
Length: 402
VRPIVSSFTCPPGDTTCSYEQYANRRSVIPAYHNKAAINSLDMYAEADQTWGWLNVRAGVHLSYEDFFGNLNLAPRLTATVSPTEDLAFVAGFNRYYNANSVYYAIRDGQPLGLTYTRSHNSSGAITNWSTAQSQVYYTFSGLDLVTPYNDEFTAAVKWTDPWLDGDLRVRYLLRQGKDQYLKSPDSTGRVMALTNDGDSQYQSASIEYGKTWAVNEGHMDTVRLSGSLTWSKQRTTSNGYFDDPTDTRIWYNDASYSLGEFAMATGNMDIPVRTSVDLVTTFLDERLTVGLSGNLNFSYDGARATDTTCTPSTSAAAKCQLPAGSEGLGMLHDIYEDFHFRPVATFDLNTTYKAVESEYGSLEFEMKVQNMFNETGNKISTATQPWIPGRSIWLGAKATF*