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SCNpilot_expt_1000_bf_scaffold_4531_curated

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4531_curated_1
unknown

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comp(343..1332)
DNA (990bp) protein (330aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4531_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1346..1468
DNA (123bp) protein (41aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CJ21_9RHIZ
Putative permease {ECO:0000313|EMBL:EYR83216.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_4531_curated_3
Rhodomicrobium vannielii, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1480..2685)
DNA (1206bp) protein (402aa)
cytochrome-c peroxidase (EC:1.11.1.5); K00428 cytochrome c peroxidase [EC:1.11.1.5] rbh
Cytochrome-c peroxidase n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I547_RHOVT rbh
Cytochrome-c peroxidase {ECO:0000313|EMBL:ADP70497.1}; EC=1.11.1.5 {ECO:0000313|EMBL:ADP70497.1};; Flags: Precursor;; TaxID=648757 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 /; LMG 4299).;"
SCNpilot_expt_1000_bf_scaffold_4531_curated_4
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2685..3890)
DNA (1206bp) protein (402aa)
Strain MEJ076 contig_8, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ03461.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
TonB-dependent receptor rbh
TonB-dependent receptor n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I548_RHOVT rbh
SCNpilot_expt_1000_bf_scaffold_4531_curated_5
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4001..5374)
DNA (1374bp) protein (458aa)
Strain MEJ076 contig_8, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ03461.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
TonB-dependent receptor
TonB-dependent receptor n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I548_RHOVT
SCNpilot_expt_1000_bf_scaffold_4531_curated_6
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5775..6671)
DNA (897bp) protein (299aa)
LysR family transcriptional regulator {ECO:0000313|EMBL:EXL01770.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
LysR family transcriptional regulator n=1 Tax=Ochrobactrum anthropi RepID=UPI000289B17B rbh
LysR family transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_4531_curated_7
unknown

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comp(7285..7470)
DNA (186bp) protein (62aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4531_curated_8
Acetobacter orleanensis, Acetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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8002..8295
DNA (294bp) protein (98aa)
Major facilitator superfamily multidrug resistance transporter EmrB/QacA {ECO:0000313|EMBL:GAN67791.1}; TaxID=1231342 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter.;" source="Acetobacter orleanensis JCM 7639.;"
major facilitator transporter
Multidrug resistance transporter EmrB/QacA n=1 Tax=Acetobacter tropicalis NBRC 101654 RepID=F7VIS6_9PROT
SCNpilot_expt_1000_bf_scaffold_4531_curated_9
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8356..8631)
DNA (276bp) protein (92aa)
FadR protein {ECO:0000313|EMBL:BAQ45464.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
GntR family transcriptional regulator n=1 Tax=Methylobacterium sp. 77 RepID=UPI000371B872
GntR family transcriptional regulator; K05799 GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
SCNpilot_expt_1000_bf_scaffold_4531_curated_10
Brucella inopinata, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9313..10986
DNA (1674bp) protein (558aa)
L-lactate transport n=1 Tax=Brucella inopinata BO1 RepID=E0DK08_9RHIZ rbh
L-lactate transport {ECO:0000313|EMBL:EFM57699.1}; TaxID=470735 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella inopinata BO1.;"
lldP; L-lactate permease; K03303 lactate transporter, LctP family rbh
SCNpilot_expt_1000_bf_scaffold_4531_curated_11
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11061..12209
DNA (1149bp) protein (383aa)
Alpha-hydroxyacid dehydrogenase, FMN-dependent L-lactate dehydrogenase n=1 Tax=Rhizobium sp. CF142 RepID=J2L8F0_9RHIZ rbh
Alpha-hydroxyacid dehydrogenase, FMN-dependent L-lactate dehydrogenase {ECO:0000313|EMBL:EJJ29329.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
FMN-dependent alpha-hydroxy acid dehydrogenase rbh
SCNpilot_expt_1000_bf_scaffold_4531_curated_12
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12223..13533)
DNA (1311bp) protein (437aa)
Alkaline protease secretion protein AprE {ECO:0000313|EMBL:AHK45792.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
hemolysin secretion protein D n=1 Tax=Rhizobium radiobacter RepID=UPI000379643A rbh
rspE; bacteriocin ABC transporter permease; K02022 HlyD family secretion protein rbh
SCNpilot_expt_1000_bf_scaffold_4531_curated_13
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13530..14030)
DNA (501bp) protein (167aa)
Alkaline protease secretion protein AprD {ECO:0000313|EMBL:AHK45793.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
ABC transporter, nucleotide binding/ATPase protein (Bacteriocin) n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UEQ8_RHIRD
rspD; bacteriocin ABC transporter ATPase; K06148 ATP-binding cassette, subfamily C, bacterial
SCNpilot_expt_1000_bf_scaffold_4531_curated_14
unknown

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14188..14865
DNA (678bp) protein (226aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4531_curated_15
unknown

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15202..15354
DNA (153bp) protein (51aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4531_curated_16
unknown

Not on your lists

16029..16400
DNA (372bp) protein (124aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4531_curated_17
unknown

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16491..16601
DNA (111bp) protein (37aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4531_curated_18
unknown

Not on your lists

16653..17042
DNA (390bp) protein (130aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4531_curated_19
unknown

Not on your lists

18078..18290
DNA (213bp) protein (71aa)

This feature has no annotations

Displaying 19 items

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