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SCNpilot_expt_1000_bf_scaffold_20419_curated_6

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(5064..5360)

Top 3 Functional Annotations

Value Algorithm Source
Binding-protein-dependent transporters inner membrane component n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CTG8_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 93.7
  • Coverage: 95.0
  • Bit_score: 180
  • Evalue 1.20e-42
ABC-type sugar transport system permease component {ECO:0000313|EMBL:EYR77855.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 93.7
  • Coverage: 95.0
  • Bit_score: 180
  • Evalue 1.60e-42
carbohydrate ABC transporter membrane protein 1, CUT1 family; K02025 multiple sugar transport system permease protein similarity KEGG
DB: KEGG
  • Identity: 42.4
  • Coverage: 92.0
  • Bit_score: 85
  • Evalue 9.30e-15

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 297
GTTCCAGACCTCCAGACCTTCCGCCACGTCACCTTGCCGATGCTGAAGCCGGTGCTGATCACCGTCATCATCTTCCGCACCATCGACACGCTGAAAGTCTTCGACATCATTTTCGGCACGACCGGCGGCGGACCTCTGAGGGCCACCGAAAGCGTGCAGACGCTCGCCTACCAGACGGCGTTCAAGTCCTACAAGTTCGGCGAGTCCGCGGCCATCGCCGTCGTCTTCTCGCTGATCATCCTGGCGCTCTGCATCCTCTACCTGATGATCGACACCGACGATGGAGAAAAGGCATGA
PROTEIN sequence
Length: 99
VPDLQTFRHVTLPMLKPVLITVIIFRTIDTLKVFDIIFGTTGGGPLRATESVQTLAYQTAFKSYKFGESAAIAVVFSLIILALCILYLMIDTDDGEKA*