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SCNpilot_expt_1000_bf_scaffold_15892_curated_9

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(5821..6090)

Top 3 Functional Annotations

Value Algorithm Source
3-isopropylmalate dehydratase large subunit n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EZR5_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 97.7
  • Coverage: 88.0
  • Bit_score: 179
  • Evalue 1.80e-42
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091369}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091399};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 97.7
  • Coverage: 88.0
  • Bit_score: 179
  • Evalue 2.50e-42
leuC; 3-isopropylmalate dehydratase large subunit; K01703 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] similarity KEGG
DB: KEGG
  • Identity: 94.4
  • Coverage: 89.0
  • Bit_score: 177
  • Evalue 1.60e-42

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 270
GGCTCCGGCCTCGTGAAGGAACAGGCCGAGCGGGAAGGCCTCGACAGGATCTTCAAGGAAGCCGGCTTCGACTGGCGCGAGCCGGGCTGCTCCATGTGCCTTGCCATGAACGACGACCGCCTGAAGCCGGGCGAGCGCTGCGCCTCCACCTCGAACCGCAACTTCGAGGGCCGCCAGGGCTTCAAGGGCCGCACGCACCTCGTCTCCCCCGCCATGGCCGCCGCCGCCGCCATTGCCGGTCATTTCGTGGATATCCGCGACTGGCAGTAA
PROTEIN sequence
Length: 90
GSGLVKEQAEREGLDRIFKEAGFDWREPGCSMCLAMNDDRLKPGERCASTSNRNFEGRQGFKGRTHLVSPAMAAAAAIAGHFVDIRDWQ*