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SCNpilot_expt_1000_bf_scaffold_15892_curated

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_15892_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..141
DNA (141bp) protein (47aa)
DNA translocase FtsK n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CJS6_9RHIZ
DNA translocase FtsK {ECO:0000313|EMBL:EYR79655.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ftsK; DNA translocase FtsK; K03466 DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
SCNpilot_expt_1000_bf_scaffold_15892_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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122..925
DNA (804bp) protein (268aa)
Outer-membrane lipoprotein carrier protein {ECO:0000256|SAAS:SAAS00088851}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
membrane protein n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI0003704E32 rbh
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_15892_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1062..1868
DNA (807bp) protein (269aa)
Exodeoxyribonuclease III n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EHE4_9RHIZ rbh
Exodeoxyribonuclease III {ECO:0000313|EMBL:EYR79657.1}; EC=3.1.11.2 {ECO:0000313|EMBL:EYR79657.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
xthA3; putative exodeoxyribonuclease III protein; K01142 exodeoxyribonuclease III [EC:3.1.11.2] rbh
SCNpilot_expt_1000_bf_scaffold_15892_curated_4
unknown

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2230..2574
DNA (345bp) protein (115aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_15892_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2575..3258)
DNA (684bp) protein (228aa)
Transcriptional regulatory protein BasR {ECO:0000313|EMBL:EYR79659.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transcriptional regulator n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI000361E620 rbh
yvrH; transcriptional regulatory protein YvrH rbh
SCNpilot_expt_1000_bf_scaffold_15892_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3585..3890
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EVD0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR79660.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_15892_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4000..4830
DNA (831bp) protein (277aa)
Aldo/keto reductase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CY69_9RHIZ rbh
Aldo/keto reductase {ECO:0000313|EMBL:EYR79661.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
yafB; oxidoreductase rbh
SCNpilot_expt_1000_bf_scaffold_15892_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5063..5575)
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D2T8_9RHIZ
Phosphohistidine phosphatase SixA {ECO:0000313|EMBL:EYR79662.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative phosphohistidine phosphatase, SixA; K08296 phosphohistidine phosphatase [EC:3.1.3.-]
SCNpilot_expt_1000_bf_scaffold_15892_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5821..6090)
DNA (270bp) protein (90aa)
3-isopropylmalate dehydratase large subunit n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EZR5_9RHIZ
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091369}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091399};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
leuC; 3-isopropylmalate dehydratase large subunit; K01703 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
Displaying 9 items

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