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SCNpilot_expt_1000_bf_scaffold_4160_curated_1

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 2..196

Top 3 Functional Annotations

Value Algorithm Source
Putative xylose isomerase domain-containing protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D1T7_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 82.3
  • Coverage: 62.0
  • Bit_score: 118
  • Evalue 2.10e-24
Putative xylose isomerase domain-containing protein {ECO:0000313|EMBL:EYR83906.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 82.3
  • Coverage: 62.0
  • Bit_score: 118
  • Evalue 2.90e-24
xylose isomerase domain-containing protein similarity KEGG
DB: KEGG
  • Identity: 75.8
  • Coverage: 62.0
  • Bit_score: 104
  • Evalue 1.30e-20

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 195
AACGAGCCGGTGCTGCGGGACGTGCCCACGGGCCGGGGCGCCCTTGACCTCAGGGAATGGGTCGACGCCGTGCGATCGACCGGCTACCGGGGCTGGTGGAGCTGCGAGCTCTTCTGCAGGCGCCAGCACCAGGACGACAGCTTCGCCGTGGCCGCCGAACTCAAGGCCGTCATGGAGCGGCTGATCCCGAACTGA
PROTEIN sequence
Length: 65
NEPVLRDVPTGRGALDLREWVDAVRSTGYRGWWSCELFCRRQHQDDSFAVAAELKAVMERLIPN*