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SCNpilot_expt_1000_bf_scaffold_4160_curated

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4160_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..196
DNA (195bp) protein (65aa)
Putative xylose isomerase domain-containing protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D1T7_9RHIZ
Putative xylose isomerase domain-containing protein {ECO:0000313|EMBL:EYR83906.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
xylose isomerase domain-containing protein
SCNpilot_expt_1000_bf_scaffold_4160_curated_2
Mastigocladus laminosus, Mastigocladus, Stigonematales, Cyanobacteria, Bacteria

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478..1368
DNA (891bp) protein (297aa)
Uncharacterized protein {ECO:0000313|EMBL:KIY11509.1}; TaxID=1594576 species="Bacteria; Cyanobacteria; Stigonematales; Mastigocladus.;" source="Mastigocladus laminosus UU774.;"
SCNpilot_expt_1000_bf_scaffold_4160_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1384..2877
DNA (1494bp) protein (498aa)
Succinate-semialdehyde dehydrogenase GabD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CTL1_9RHIZ rbh
Succinate-semialdehyde dehydrogenase GabD {ECO:0000313|EMBL:EYR78347.1}; EC=1.2.1.79 {ECO:0000313|EMBL:EYR78347.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
gabD2; succinic semialdehyde dehydrogenase (EC:1.2.1.16); K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16] rbh
SCNpilot_expt_1000_bf_scaffold_4160_curated_4
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2954..3997
DNA (1044bp) protein (348aa)
General L-amino acid-binding periplasmic protein AapJ {ECO:0000313|EMBL:KEC82210.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
General L-amino acid-binding periplasmic protein AapJ n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D2M2_9RHIZ rbh
aapJ1; amino acid ABC transporter, substrate-binding component; K09969 general L-amino acid transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_4160_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3997..5121
DNA (1125bp) protein (375aa)
Binding-protein-dependent transport system inner membrane component n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CY02_9RHIZ rbh
Amino acid ABC transporter membrane protein 1, PAAT family {ECO:0000313|EMBL:EYR78349.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
bztB; general L-amino acid transport system permease protein; K09970 general L-amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_4160_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5118..6197
DNA (1080bp) protein (360aa)
General L-amino acid transport system permease protein BztC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EV63_9RHIZ rbh
Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family {ECO:0000313|EMBL:EYR78350.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
aapM; general L-amino acid transport system permease
SCNpilot_expt_1000_bf_scaffold_4160_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6239..6901
DNA (663bp) protein (221aa)
HTH-type transcriptional regulator McbR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CDP0_9RHIZ rbh
HTH-type transcriptional regulator McbR {ECO:0000313|EMBL:EYR78351.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_4160_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6986..7423
DNA (438bp) protein (146aa)
ABC-type polar amino acid transport system ATPase component {ECO:0000313|EMBL:EYR78354.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002E3BA6C
ABC transporter; K09972 general L-amino acid transport system ATP-binding protein [EC:3.6.3.-]
Displaying 8 items

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