ggKbase home page

SCNpilot_expt_1000_bf_scaffold_4160_curated_8

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 6986..7423

Top 3 Functional Annotations

Value Algorithm Source
ABC-type polar amino acid transport system ATPase component {ECO:0000313|EMBL:EYR78354.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 91.8
  • Coverage: 146.0
  • Bit_score: 277
  • Evalue 8.40e-72
ABC transporter n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002E3BA6C similarity UNIREF
DB: UNIREF100
  • Identity: 80.8
  • Coverage: 146.0
  • Bit_score: 253
  • Evalue 1.20e-64
ABC transporter; K09972 general L-amino acid transport system ATP-binding protein [EC:3.6.3.-] similarity KEGG
DB: KEGG
  • Identity: 80.1
  • Coverage: 146.0
  • Bit_score: 250
  • Evalue 3.20e-64

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 438
ATGGCGGGCGAAAATGTCATACGTGCCGGCGATCTTCATGCCGACACCGCGAAGATGCAGGTCTCGGCGACCGATATCGCGATCAGGATCGAGAAGATGCACAAGTGGTACGGTGAGTACCATGTCCTCAGGGACATCGACCTGACGGTGATGAAGGGCGAGCGCATCGTCATCTGCGGCCCGTCGGGCTCCGGCAAGTCGACGATGATCCGCTGCATCAACCGGCTGGAGGAGCACCAGAAGGGCCGCATCGTCGTCGACGGCATCGAGCTCACCAACGACCTCAAGAAGATCGACGAGGTGCGCCGCGAGGTCGGCATGGTGTTCCAGCACTTCAACCTCTTCCCGCACCTGACGATCCTCGAAAACTGCACGCTCGCGCCGATCTGGGTGCGCAAGATGCCGAAGAAGGAGGCCGAGGAAGTGGCGATGCACTAC
PROTEIN sequence
Length: 146
MAGENVIRAGDLHADTAKMQVSATDIAIRIEKMHKWYGEYHVLRDIDLTVMKGERIVICGPSGSGKSTMIRCINRLEEHQKGRIVVDGIELTNDLKKIDEVRREVGMVFQHFNLFPHLTILENCTLAPIWVRKMPKKEAEEVAMHY