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SCNpilot_expt_1000_bf_scaffold_4160_curated_7

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 6239..6901

Top 3 Functional Annotations

Value Algorithm Source
HTH-type transcriptional regulator McbR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CDP0_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 93.6
  • Coverage: 220.0
  • Bit_score: 396
  • Evalue 1.80e-107
  • rbh
HTH-type transcriptional regulator McbR {ECO:0000313|EMBL:EYR78351.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 93.6
  • Coverage: 220.0
  • Bit_score: 396
  • Evalue 2.50e-107
GntR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 41.6
  • Coverage: 197.0
  • Bit_score: 139
  • Evalue 9.30e-31

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 663
ATGCAGACCTACAGGACCCTCGTCCAGGATACGCTCAACGAGCAGATCTACCAGCAGATCAAGGAGAAGCTGATCATCGGCGAGTTCCGCCCCGGCGACCGGCTGGTGCTGAGGAACCTCGCCGCCGCCCTCGGAACGAGCGTCGTTCCGGTGCGCGATGCGCTGCAGAAGCTCGAAAGCCTCGGCGCGCTGCGCCTCGAACGCACCTTCGTCGTGCCGCGCCTGACCATCGCGGAGCTGACGGAAATCCGCGACATCCGCGTCGCCCTCGAAGGCCTTTCGGCCGCCCGCGCGGCACGCGGCGCGACCGCCGAGAGCCTTGCGGGCCTGCGCGTCCATTTCGACGCGATGAAGGAGGCGGCCCGGGCCAACGACACCAGCCGGTTCCTGCGCGCCAATGCCCGCTTCCACCTGCATATCGCGGACATGAGCCATTCGCCGATCCTGCGCGACATGATCGAGCCGCTCTGGCTGCGCATGGGGCCCTCGGTGCGCCTCGCCAAGGCCGAGCCCGGCAAGCTGACCGATGCCATTCCCGACCACGAGACGGCCTTCGCGGCGATCGCGTCCGGCGACGCGGCCGCCGCGCGCAAGGCGGTCGTGTCCGATGTCGTCAACTGCTTCGGCATCCTGGCCGATGCCTTCCAGGGCGCGGACGAATGA
PROTEIN sequence
Length: 221
MQTYRTLVQDTLNEQIYQQIKEKLIIGEFRPGDRLVLRNLAAALGTSVVPVRDALQKLESLGALRLERTFVVPRLTIAELTEIRDIRVALEGLSAARAARGATAESLAGLRVHFDAMKEAARANDTSRFLRANARFHLHIADMSHSPILRDMIEPLWLRMGPSVRLAKAEPGKLTDAIPDHETAFAAIASGDAAAARKAVVSDVVNCFGILADAFQGADE*