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SCNpilot_expt_1000_bf_scaffold_4160_curated_5

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 3997..5121

Top 3 Functional Annotations

Value Algorithm Source
Binding-protein-dependent transport system inner membrane component n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CY02_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 92.0
  • Coverage: 374.0
  • Bit_score: 670
  • Evalue 1.10e-189
  • rbh
Amino acid ABC transporter membrane protein 1, PAAT family {ECO:0000313|EMBL:EYR78349.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 92.0
  • Coverage: 374.0
  • Bit_score: 670
  • Evalue 1.50e-189
bztB; general L-amino acid transport system permease protein; K09970 general L-amino acid transport system permease protein similarity KEGG
DB: KEGG
  • Identity: 46.6
  • Coverage: 371.0
  • Bit_score: 302
  • Evalue 1.40e-79

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1125
ATGCGTAGCGAGCGCCTTCAAAACGCGCTGTTTGTCGCGGCAGCCATCGCAGTTCTTGCGTGGCTGTCGCACAATCTTGCGTCCAACCTCGCCGCCCGCGGCATCACAATCGACTACGGCTTCCTGTGGAGCGCCACGTCGTTCCCGATCGGCGAGTCGCTGATCTCCTTCGGCTCGGGCGACACCTATTTCCGGGCGCTGCTCGTCGGGCTGCTCAACACCGTCAAGCTGGCGCTTGCCGCCATCGTGCTCTCTACCCTGCTCGGCGTCTTGATCGGCCTTGCGGGGCGCACCGCCCATCCGCAGCTCCGTGCCCTCGCCAAAGCCTATATCGAGGTGACGCGCAACACGCCGCTGCTGCTCATCCTCGTCGTCTGCGCCACCGCCGTGCGCGTCCTGCCGCCGCCGCGCCAGGCCTGGACCTTCGGGGAATCCATCTTCATCTCCAGCCGCGGCCTCTACATCCCGACGGTGGTCACCGGCGAGGCCGGCCCCGTCCTCGCCGCCGTCGCCGTGCTCGCCCTTGCCTGCGGCTTCCTCTTCTGGCGCGCCATGGTGCGCGGCCGCAACGAGACGGGCCGTTTCCCGCGGCCCGCCACCGGCGGCCTCTTCCTCTCGGCCGCCGCGCTTGTCGGCGTCGTCGTCTATGCGCTCGGCTGGGGCGAGATCCAGAAGCCGACGCTGATGGGCTTCAACTTCCGCGGCGGCATGGGCATGACGCCGGAATATCTGGCGATGCTGGTAGGACTTTCCTTCTATACCTCCGGCTTCATCGCCGAGATCGTCCGCGGCAGCCTCGCTGCCCTGCCGAAGGGCCAGTCGGAAGCCGCCAACTCGCTCGGCCTCAGCCCGCTCCTCACCCTCTACCTGGTGCTCGCCCCGCAGGCGATGCGGCTCATGCTGCCGCCGCTCGCCAACCAGTATCTCAACGCCATCAAGAACACGACGCTCGCCGTGCTCATCGGCTATCCGGACCTGGTTTCCGTCGGCAACACCGCGCTCAACCAGACCGGCCGGGCCATCGAGACCGTGTCCATCTACCTTCTGATCTACCTGTCGCTCAGCCTCGTGACCTCCGCGGTCATCCGCTGGCTGGAAAAGCGCGCGCAACTGGTGAAGTCATGA
PROTEIN sequence
Length: 375
MRSERLQNALFVAAAIAVLAWLSHNLASNLAARGITIDYGFLWSATSFPIGESLISFGSGDTYFRALLVGLLNTVKLALAAIVLSTLLGVLIGLAGRTAHPQLRALAKAYIEVTRNTPLLLILVVCATAVRVLPPPRQAWTFGESIFISSRGLYIPTVVTGEAGPVLAAVAVLALACGFLFWRAMVRGRNETGRFPRPATGGLFLSAAALVGVVVYALGWGEIQKPTLMGFNFRGGMGMTPEYLAMLVGLSFYTSGFIAEIVRGSLAALPKGQSEAANSLGLSPLLTLYLVLAPQAMRLMLPPLANQYLNAIKNTTLAVLIGYPDLVSVGNTALNQTGRAIETVSIYLLIYLSLSLVTSAVIRWLEKRAQLVKS*