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SCNpilot_expt_1000_bf_scaffold_4160_curated_3

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 1384..2877

Top 3 Functional Annotations

Value Algorithm Source
Succinate-semialdehyde dehydrogenase GabD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CTL1_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 89.1
  • Coverage: 497.0
  • Bit_score: 888
  • Evalue 2.50e-255
  • rbh
Succinate-semialdehyde dehydrogenase GabD {ECO:0000313|EMBL:EYR78347.1}; EC=1.2.1.79 {ECO:0000313|EMBL:EYR78347.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 89.1
  • Coverage: 497.0
  • Bit_score: 888
  • Evalue 3.60e-255
gabD2; succinic semialdehyde dehydrogenase (EC:1.2.1.16); K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16] similarity KEGG
DB: KEGG
  • Identity: 63.0
  • Coverage: 492.0
  • Bit_score: 643
  • Evalue 7.60e-182
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1494
ATGACCGTGCACCAACTTTCGCCACGCCCCCTTGCCGAACGCCTTGCAGACCCCTCGCTGTTGCGCGAGCGTGCCTATATCGACGGCGCATGGGCGGAGGCCGACAGCGGCGCCGTGGTGGCGGTGGTCGACCCGGCGACGGGCCTTGAGATCGGCACGGTGCCGAACATGGGCGCCGCCGAGACCCGCCGCGCCATCGAGGCGGCAGAGGAAGCCCGTCATGATTGGGCGGCGCTCGCAGCCAAGGACCGCGCCGTCGTGCTGCGCCGCTGGTTCGACCTGATCGTCGCCAACCTTCCCGACCTTGCCGCCATCATGACGGCCGAGCAGGGCAAGCCGCTGGCCGAAAGCCAGGGGGAAATCCGTTATGCCGCCTCCTTCGTGGAGTGGTTCGCCGAGGAGGCGAAGCGCGCCTATGGCGACCTCATCCCCGCCCCGCGCGCCCAGTCGCGCATCATGGTGCTCAAGCAGCCGATCGGCGTCGTCGCCGCCATCACGCCGTGGAACTTCCCCTCGGCCATGATCACCCGCAAATGCGCCCCGGCCTTCGCCGCCGGCTGCGCGGTCGTCGTCAAGCCCTCCGAGTTCACGCCCTATTCGGCGCTGGCGCTGGCCGAGCTTGCCGAGCGCGCCGGCATCCCCAAGGGCGTCTTCAACATCGTCACCGGCGAGGCGACGGCCATCGGCGGCGAGATGACCGCAAGCCCGATCGTGCGCAAGATCAGCTTCACCGGCTCCACCCGCGTCGGCAAGCTGCTCCTGGAGCAGTCGGCCAACACGGTGAAAAAGGTGGCCATGGAGCTCGGCGGCAACGCCCCGCTCATCGTCTTCGACGACGCCGACCTCGACGTCGCCGTGCAGGGCGTCATCAACGCGAAGTTCCGCAACACCGGACAGACCTGCATCTGCCCGAACCGCATCTATGTGCATGAAAACATCCACGACGCCTTCGTCGCCCGCCTTTCGGCGGCGGTCGGCGCGCTCAAGGTCGGCGACGGCTTTGCGGACGGCGTGCAGCAGGGCCCGCTGATCAACGAGGCGGCGCTGACAAAGGTCGAGCGCCATGTCGCCGACGCGCTCGGCAAGGGCGCCAAGGTCGCCACCGGCGGCAGGCGCCACGGCCTCGGCCAGACCTTCTACGAGCCGACCGTGCTGACCGATGTCGACGCCACCATGCTCTTCGAGAGCGAGGAGACCTTCGGCCCCGTCGCCCCGATCCAGCGCTTTTCCGACGAGAAAAGCGTCATCAAGGCGGCGAACGCCACCGCTTCCGGCCTTGCCGCCTACATCTTCACCCGCGACCTCGACCGCATGTGGCGGGTCGCCGAGAAGATCGAGTCCGGCATCGTCGGCGTCAACGAGGGCCTGGTGTCGAACGAGGTCGCGCCCTTCGGCGGCGTGAAGGAATCCGGCATCGGCCGCGAGGGCTCGAAATACGGGATCGAGGAATTCCTCGAGCTCAAATACGTCTGCATCACCCAATCGGCAGCCTGA
PROTEIN sequence
Length: 498
MTVHQLSPRPLAERLADPSLLRERAYIDGAWAEADSGAVVAVVDPATGLEIGTVPNMGAAETRRAIEAAEEARHDWAALAAKDRAVVLRRWFDLIVANLPDLAAIMTAEQGKPLAESQGEIRYAASFVEWFAEEAKRAYGDLIPAPRAQSRIMVLKQPIGVVAAITPWNFPSAMITRKCAPAFAAGCAVVVKPSEFTPYSALALAELAERAGIPKGVFNIVTGEATAIGGEMTASPIVRKISFTGSTRVGKLLLEQSANTVKKVAMELGGNAPLIVFDDADLDVAVQGVINAKFRNTGQTCICPNRIYVHENIHDAFVARLSAAVGALKVGDGFADGVQQGPLINEAALTKVERHVADALGKGAKVATGGRRHGLGQTFYEPTVLTDVDATMLFESEETFGPVAPIQRFSDEKSVIKAANATASGLAAYIFTRDLDRMWRVAEKIESGIVGVNEGLVSNEVAPFGGVKESGIGREGSKYGIEEFLELKYVCITQSAA*