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SCNpilot_expt_1000_bf_scaffold_3931_curated_20

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 18492..18713

Top 3 Functional Annotations

Value Algorithm Source
Spermidine/putrescine import ATP-binding protein PotA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D1N6_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 97.3
  • Coverage: 74.0
  • Bit_score: 144
  • Evalue 5.30e-32
Spermidine/putrescine import ATP-binding protein PotA {ECO:0000256|HAMAP-Rule:MF_01726}; EC=3.6.3.31 {ECO:0000256|HAMAP-Rule:MF_01726};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 97.3
  • Coverage: 74.0
  • Bit_score: 144
  • Evalue 7.40e-32
ABC transporter ATP-binding protein; K02052 putative spermidine/putrescine transport system ATP-binding protein similarity KEGG
DB: KEGG
  • Identity: 85.1
  • Coverage: 74.0
  • Bit_score: 129
  • Evalue 3.20e-28

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 222
GTGCTGCTGCTCGACGAGCCGCTTTCCGCGCTCGACCTCAAGCTGCGCAAGTCCATGCAGATGGAACTCAAGCGCCTGCAGCTCGAAACCGGCATCACCTTCGTCTTCGTCACGCACGACCAGGAAGAAGCGCTCACCATGTCCGACCGCATCGCCGTCATGTCGACGGGCACGGTCCGTCAGGTCGGCTCGCCCTGGGACATCTACGATCGTCCGGCCGAA
PROTEIN sequence
Length: 74
VLLLDEPLSALDLKLRKSMQMELKRLQLETGITFVFVTHDQEEALTMSDRIAVMSTGTVRQVGSPWDIYDRPAE