ggKbase home page

SCNpilot_expt_1000_bf_scaffold_3931_curated

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3931_curated_1
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..341)
DNA (339bp) protein (113aa)
Branched-chain amino acid aminotransferase; K00824 D-alanine transaminase [EC:2.6.1.21]
D-amino-acid transaminase n=1 Tax=Sinorhizobium meliloti CCNWSX0020 RepID=H0FSI0_RHIML
Branched-chain amino acid aminotransferase {ECO:0000313|EMBL:CDH82699.1}; EC=2.6.1.21 {ECO:0000313|EMBL:CDH82699.1};; TaxID=1401243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti RU11/001.;"
SCNpilot_expt_1000_bf_scaffold_3931_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

818..1333
DNA (516bp) protein (172aa)
Transcription regulator, Lrp/AsnC family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EQX4_9RHIZ rbh
Transcription regulator, Lrp/AsnC family {ECO:0000313|EMBL:EYR78546.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transcription regulator, Lrp/AsnC family; K03718 Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
SCNpilot_expt_1000_bf_scaffold_3931_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1337..2881
DNA (1545bp) protein (515aa)
Hydantoin utilization protein A n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C829_9RHIZ rbh
Hydantoin utilization protein A {ECO:0000313|EMBL:EYR78545.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Hydantoinase rbh
SCNpilot_expt_1000_bf_scaffold_3931_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2878..3999
DNA (1122bp) protein (374aa)
Putative hydantoinase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CNX2_9RHIZ rbh
Putative hydantoinase {ECO:0000313|EMBL:EYR78544.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative hydantoinase; K09703 hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_3931_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4034..5596
DNA (1563bp) protein (521aa)
Putative D,D-dipeptide-binding periplasmic protein DdpA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXZ9_9RHIZ rbh
Putative D,D-dipeptide-binding periplasmic protein DdpA {ECO:0000313|EMBL:EYR78543.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
extracellular solute-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_3931_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5613..6635
DNA (1023bp) protein (341aa)
Dipeptide transport system permease protein DppB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CTD4_9RHIZ rbh
ABC-type dipeptide/oligopeptide/nickel transport system permease component {ECO:0000313|EMBL:EYR78542.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
binding-protein-dependent transporters inner membrane component; K02033 peptide/nickel transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_3931_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6632..7471
DNA (840bp) protein (280aa)
Putative D,D-dipeptide transport system permease protein DdpC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EQW9_9RHIZ rbh
Putative D,D-dipeptide transport system permease protein DdpC {ECO:0000313|EMBL:EYR78541.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
binding-protein-dependent transport system inner membrane protein; K02034 peptide/nickel transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_3931_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7458..8411
DNA (954bp) protein (318aa)
Oligopeptide ABC transport system ATP-binding protein AppD {ECO:0000313|EMBL:EYR78540.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
oligopeptide/dipeptide ABC transporter, ATPase subunit rbh
Oligopeptide/dipeptide ABC transporter, ATPase subunit n=1 Tax=Streptomyces cattleya (strain ATCC 35852 / DSM 46488 / JCM 4925 / NBRC 14057 / NRRL 8057) RepID=F8JK24_STREN rbh
SCNpilot_expt_1000_bf_scaffold_3931_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8408..9163
DNA (756bp) protein (252aa)
Oligopeptide transport ATP-binding protein OppF n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EVZ9_9RHIZ rbh
Oligopeptide ABC transport system ATP-binding protein OppF {ECO:0000313|EMBL:EYR78539.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter
SCNpilot_expt_1000_bf_scaffold_3931_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9270..10364
DNA (1095bp) protein (365aa)
Integrase/recombinase XerD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CM93_9RHIZ rbh
Integrase/recombinase xerD {ECO:0000313|EMBL:EYR81582.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative phage integrase rbh
SCNpilot_expt_1000_bf_scaffold_3931_curated_11
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10413..11543)
DNA (1131bp) protein (377aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035F53AC rbh
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KFL27082.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
substrate-binding component of ABC transporter rbh
SCNpilot_expt_1000_bf_scaffold_3931_curated_12
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11595..12590)
DNA (996bp) protein (332aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037333B7 rbh
ABC transporter permease {ECO:0000313|EMBL:KGM31453.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
ribose transporter permease RbsC
SCNpilot_expt_1000_bf_scaffold_3931_curated_13
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12587..13141)
DNA (555bp) protein (185aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003827FF2
ABC transporter permease {ECO:0000313|EMBL:KGM31452.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
sugar ABC transporter permease; K10440 ribose transport system permease protein
SCNpilot_expt_1000_bf_scaffold_3931_curated_14
unknown

Not on your lists

13246..13605
DNA (360bp) protein (120aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3931_curated_15
Wenxinia marina, Wenxinia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13550..15067)
DNA (1518bp) protein (506aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035EB53D rbh
Wenxma_9, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ69242.1}; EC=3.6.3.17 {ECO:0000313|EMBL:KIQ69242.1};; TaxID=1123501 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Wenxinia.;" source="Wenxinia marina DSM 24838.;"
ABC-type sugar transport system rbh
SCNpilot_expt_1000_bf_scaffold_3931_curated_16
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15064..15462)
DNA (399bp) protein (133aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036EF3DC
Uncharacterized protein {ECO:0000313|EMBL:KGM30782.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
putative epimerase protein
SCNpilot_expt_1000_bf_scaffold_3931_curated_17
unknown

Not on your lists

15662..15922
DNA (261bp) protein (87aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3931_curated_18
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15873..17078
DNA (1206bp) protein (402aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003632EFE rbh
Uncharacterized protein {ECO:0000313|EMBL:KKB07038.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
AraC family transcriptional regulator; K02855 AraC family transcriptional regulator, L-rhamnose operon regulatory protein RhaS
SCNpilot_expt_1000_bf_scaffold_3931_curated_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17093..17779)
DNA (687bp) protein (229aa)
GntR family transcriptional regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CX36_9RHIZ rbh
GntR family transcriptional regulator {ECO:0000313|EMBL:EYR77384.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_3931_curated_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18492..18713
DNA (222bp) protein (74aa)
Spermidine/putrescine import ATP-binding protein PotA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D1N6_9RHIZ
Spermidine/putrescine import ATP-binding protein PotA {ECO:0000256|HAMAP-Rule:MF_01726}; EC=3.6.3.31 {ECO:0000256|HAMAP-Rule:MF_01726};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter ATP-binding protein; K02052 putative spermidine/putrescine transport system ATP-binding protein
Displaying 20 items

View Taxonomy