ggKbase home page

SCNpilot_expt_1000_bf_scaffold_3931_curated_10

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 9270..10364

Top 3 Functional Annotations

Value Algorithm Source
Integrase/recombinase XerD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CM93_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 82.0
  • Coverage: 367.0
  • Bit_score: 611
  • Evalue 7.50e-172
  • rbh
Integrase/recombinase xerD {ECO:0000313|EMBL:EYR81582.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 87.2
  • Coverage: 345.0
  • Bit_score: 607
  • Evalue 8.90e-171
putative phage integrase similarity KEGG
DB: KEGG
  • Identity: 81.0
  • Coverage: 363.0
  • Bit_score: 588
  • Evalue 1.60e-165
  • rbh

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1095
ATGGCCAGAATCACGTCGCACCGCCCGGATGATCACGAAGATGCGACCGACGCGTCGCCCGGCGACGGCCTTTCGCAAGAAGTCGCCGTTTCCGCCCCGCCGGCGCCGCCCGCGCATCTGCAAGACCTCACCGACCGCGCCCGCTCCTATGTCGAGGCGGCAAGTTCGGCCAATACACGGCGGGCCTATGCGGCGGACTGGAAGCATTTTTCCGCCTGGTGCCGGCGGCAGGGCCTTTCGCCGTTCCCGCCGGACCCGCAAGTGGTCGGCCTTTACATCACGGCTTGCGCCTCGGGCACGGCCGAGCGCGGCACCAGGCCGAACACCGTCTCCACCATCGAGCGGCGCCTTTCCGCCATCGGCTGGAACTGCGCGCAGCGCGGCGTGCCGCTCGATCGCAGGGACCGCCACATCGCCACCGTGCTGGCCGGCATCCGCAACCGGCATGCCGCCCCGCCGCGGCAGAAGGAGGCGATCCTGCCCGAAGACCTCCTCGCCATGCTGGAAACGCTCGACCGCGGCACGCTGCGCGGCCTGCGCGACCGCGCCATGCTGCTCATCGGCTTTGCCGGCGGCCTGCGCCGCTCGGAGATCACCGGGCTCGACCTCGGCCGCGACCAGACGGAAGACGGCCGCGGCTGGATCGAGATCTTCGACAAGGGGGCTCTGGCGACGCTGCGCGGCAAGACCGGCTGGCGAGAGGTGGAGATCGGCCGCGGCTCCTCCGACGCCACCTGCCCGGTCGCCGCGCTGGAGACGTGGATAAAATTCGCCCGGATCGCCAAGGGGGCCCTCTTTCGCCGCGTGACCGGCAAGGGAAAGGACGTCGGCCCGGACCGCCTCAACGACCAGGAGGTGGCACGCCTCGTCAAGAAGACCGCGCTCGCCGCCGGCGTTCGCGGCGACCTCTCCGAGGCCGAGCGGGCGGAAAGGTTCGCCGGCCATTCGCTGCGCGCCGGCCTTGCCTCCTCCGCCGAGGTCGATGAGCGCCATGTCCAGAAGCAGCTTGGCCACGCCTCGGCCGAAATGACCCGGCGATACCAGCGCCGGCGCGACCGCTTCCGCATAAACCTCACCAAGGCGGCCGGCCTGTGA
PROTEIN sequence
Length: 365
MARITSHRPDDHEDATDASPGDGLSQEVAVSAPPAPPAHLQDLTDRARSYVEAASSANTRRAYAADWKHFSAWCRRQGLSPFPPDPQVVGLYITACASGTAERGTRPNTVSTIERRLSAIGWNCAQRGVPLDRRDRHIATVLAGIRNRHAAPPRQKEAILPEDLLAMLETLDRGTLRGLRDRAMLLIGFAGGLRRSEITGLDLGRDQTEDGRGWIEIFDKGALATLRGKTGWREVEIGRGSSDATCPVAALETWIKFARIAKGALFRRVTGKGKDVGPDRLNDQEVARLVKKTALAAGVRGDLSEAERAERFAGHSLRAGLASSAEVDERHVQKQLGHASAEMTRRYQRRRDRFRINLTKAAGL*