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SCNpilot_expt_1000_bf_scaffold_2123_curated_3

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(1142..2014)

Top 3 Functional Annotations

Value Algorithm Source
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00036112D5 similarity UNIREF
DB: UNIREF100
  • Identity: 72.1
  • Coverage: 290.0
  • Bit_score: 435
  • Evalue 3.40e-119
  • rbh
LysR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 65.9
  • Coverage: 290.0
  • Bit_score: 394
  • Evalue 2.10e-107
  • rbh
Putative transcriptional regulator, LysR family {ECO:0000313|EMBL:AFL48960.1}; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 65.9
  • Coverage: 290.0
  • Bit_score: 394
  • Evalue 9.40e-107

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Taxonomy

Sinorhizobium fredii → Sinorhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 873
ATGAAAGACATGTCCTGGGAATCCTATCGCACCTTTCTCGACGTCGCCCGGCAGGGCGGGCTGACCGGGGCCGCGCAGGCGTCCGGCCTCAGCCCGGCCACGGTGGGGCGGCGCATCCTGCAACTGGAGGAGGCGATGGGCCGCGTGCTCTTCCAGCGCAGCCAGACGGGCTACCGGATGACGGCCGAGGGTCAGGCGCTCCATGACCGGCTTCTTGCCATGGAGGCGATCGCCCGCGGCATCGAGAGCTGGCGGCAGGAAGGGCAGGGCACGACGACGGTGCGGGTCATGGCCGGCACCTGGGTGACATGGCTCGTCTGCGAGAACATGACCGCGATCTGCACCGGGCGCGATCCGTTCCGCCTCGACCTTTCGGTTTCCGAGCGCCGGGCGACGCTGGCGCATCGCGAGGTGGATGTCGCCCTTCGAGCCGTCGAGCCCACCGAGCCGGCCCTCATCAGCCGTCCCGCCGGCGATGTCGCTTATGCCGCCTACCGGCGCAGGAATGCAGGCGACGCGCTCGCCGATCGCTGGCTGGCGGTGTCTGAGGAGGATGCGGTATCGGCCTATCTGCGCTGGCCGCATGAACGGATGGGCGGCTCCATCGCCATCGTCGTCAGCCGGCCGCGCTCGCTGCTCGATCTCGCGCGGTCGGGCGCCGGGCAGGCGGTGCTGCCCTGCTTCGTCGGCGATCTCGATCCGGACCTGGAGCGGGCCGGCGAGGAAATCCGCGAGTTGCGGCACCATCAATGGATCGTCGCCAACGGCGAGGACCGCCATCGGCGCGATATCCGCACCGTTTCCGACCGGCTGTTCCGGCTGCTGAAAAGCTACAGTGACCTCTTTTCCGGCAGGCGGCCGAGCCGGACATGA
PROTEIN sequence
Length: 291
MKDMSWESYRTFLDVARQGGLTGAAQASGLSPATVGRRILQLEEAMGRVLFQRSQTGYRMTAEGQALHDRLLAMEAIARGIESWRQEGQGTTTVRVMAGTWVTWLVCENMTAICTGRDPFRLDLSVSERRATLAHREVDVALRAVEPTEPALISRPAGDVAYAAYRRRNAGDALADRWLAVSEEDAVSAYLRWPHERMGGSIAIVVSRPRSLLDLARSGAGQAVLPCFVGDLDPDLERAGEEIRELRHHQWIVANGEDRHRRDIRTVSDRLFRLLKSYSDLFSGRRPSRT*