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SCNpilot_expt_1000_bf_scaffold_2123_curated

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2123_curated_1
Mastigocladus laminosus, Mastigocladus, Stigonematales, Cyanobacteria, Bacteria

Not on your lists

comp(2..361)
DNA (360bp) protein (120aa)
Uncharacterized protein {ECO:0000313|EMBL:KIY12814.1}; TaxID=1594576 species="Bacteria; Cyanobacteria; Stigonematales; Mastigocladus.;" source="Mastigocladus laminosus UU774.;"
SCNpilot_expt_1000_bf_scaffold_2123_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

847..1086
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQS2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80421.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2123_curated_3
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1142..2014)
DNA (873bp) protein (291aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00036112D5 rbh
LysR family transcriptional regulator rbh
Putative transcriptional regulator, LysR family {ECO:0000313|EMBL:AFL48960.1}; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
SCNpilot_expt_1000_bf_scaffold_2123_curated_4
unknown

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2172..2318
DNA (147bp) protein (49aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2123_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2365..4887)
DNA (2523bp) protein (841aa)
Putative chemoreceptor y4fA {ECO:0000313|EMBL:EYR80418.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00037EFBBF rbh
chemoreceptor y4fA; K03406 methyl-accepting chemotaxis protein rbh
SCNpilot_expt_1000_bf_scaffold_2123_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5126..5362)
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BZZ3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80417.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_2123_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5414..6595)
DNA (1182bp) protein (394aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CFG9_9RHIZ rbh
Flavoprotein, HI0933 family {ECO:0000313|EMBL:EYR80416.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
flavoprotein, HI0933 family rbh
SCNpilot_expt_1000_bf_scaffold_2123_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6761..8200
DNA (1440bp) protein (480aa)
Gamma-glutamylputrescine synthetase PuuA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D4T2_9RHIZ rbh
Gamma-glutamylputrescine synthetase PuuA {ECO:0000313|EMBL:EYR80415.1}; EC=6.3.1.11 {ECO:0000313|EMBL:EYR80415.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
puuA; gamma-glutamylputrescine synthetase PuuA (EC:6.3.1.11) rbh
SCNpilot_expt_1000_bf_scaffold_2123_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8295..9578
DNA (1284bp) protein (428aa)
Putative oxidoreductase OrdL n=1 Tax=Shinella zoogloeoides DD12 RepID=V5F0G3_9RHIZ rbh
Putative oxidoreductase OrdL {ECO:0000313|EMBL:EYR80414.1}; EC=1.-.-.- {ECO:0000313|EMBL:EYR80414.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ordL; FAD dependent oxidoreductase rbh
SCNpilot_expt_1000_bf_scaffold_2123_curated_10
unknown

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comp(10029..10208)
DNA (180bp) protein (60aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2123_curated_11
unknown

Not on your lists

comp(10680..10868)
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2123_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10973..11137
DNA (165bp) protein (55aa)
Glucose-6-phosphate 1-dehydrogenase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CKB2_9RHIZ
Glucose-6-phosphate 1-dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497}; Short=G6PD {ECO:0000256|HAMAP-Rule:MF_00966};; EC=1.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
zwf-1; glucose-6-phosphate 1-dehydrogenase 1 (EC:1.1.1.49)
SCNpilot_expt_1000_bf_scaffold_2123_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11147..11845
DNA (699bp) protein (233aa)
6-phosphogluconolactonase Pgl n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D0B1_9RHIZ rbh
6-phosphogluconolactonase Pgl {ECO:0000313|EMBL:EYR80412.1}; EC=3.1.1.31 {ECO:0000313|EMBL:EYR80412.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
pgl; 6-phosphogluconolactonase (EC:3.1.1.31); K01057 6-phosphogluconolactonase [EC:3.1.1.31] rbh
SCNpilot_expt_1000_bf_scaffold_2123_curated_14
Pelagibaca bermudensis, Pelagibaca, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11842..12483)
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601) RepID=Q0FNY4_PELBH
Uncharacterized protein {ECO:0000313|EMBL:EAU45919.1}; TaxID=314265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pelagibaca.;" source="Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2123_curated_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12662..13783
DNA (1122bp) protein (374aa)
Phosphogluconate dehydratase Edd n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D948_9RHIZ rbh
Phosphogluconate dehydratase Edd {ECO:0000313|EMBL:EYR80411.1}; EC=4.2.1.12 {ECO:0000313|EMBL:EYR80411.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
phosphogluconate dehydratase (EC:4.2.1.12); K01690 phosphogluconate dehydratase [EC:4.2.1.12] rbh
SCNpilot_expt_1000_bf_scaffold_2123_curated_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13881..14294)
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D4S7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80410.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2123_curated_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14427..15518)
DNA (1092bp) protein (364aa)
Alpha-glucoside transport ATP-binding protein AglK n=1 Tax=Shinella zoogloeoides DD12 RepID=V5F0F8_9RHIZ rbh
Alpha-glucoside transport ATP-binding protein AglK {ECO:0000313|EMBL:EYR80409.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
aglK; alpha-glucosides transport system, ATP-binding protein; K10235 alpha-glucoside transport system ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_2123_curated_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15586..16521)
DNA (936bp) protein (312aa)
Putative alpha-glucosidase AglA {ECO:0000313|EMBL:EYR80408.1}; EC=3.2.1.20 {ECO:0000313|EMBL:EYR80408.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
aglA1; alpha-glucosidase (EC:3.2.1.20); K01187 alpha-glucosidase [EC:3.2.1.20] rbh
alpha-glucosidase n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00037B0554 rbh
SCNpilot_expt_1000_bf_scaffold_2123_curated_19
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17891..18517
DNA (627bp) protein (209aa)
Uncharacterized protein {ECO:0000313|EMBL:KFL27715.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
transcriptional regulator RafR
Transcriptional regulator RafR, putative n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAC1_PELHB
SCNpilot_expt_1000_bf_scaffold_2123_curated_20
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18527..18829)
DNA (303bp) protein (101aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8HTT8_AZOC5
Uncharacterized protein {ECO:0000313|EMBL:BAF86869.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_expt_1000_bf_scaffold_2123_curated_21
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19196..20395)
DNA (1200bp) protein (400aa)
Alpha-glucoside transport system permease protein AglG {ECO:0000313|EMBL:CDP52766.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
alpha-glucoside transport system permease protein AglG; K10234 alpha-glucoside transport system permease protein rbh
Alpha-glucoside transport system permease protein AglG n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAC0_PELHB rbh
SCNpilot_expt_1000_bf_scaffold_2123_curated_22
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20395..20526)
DNA (132bp) protein (44aa)
ABC alpha-glucoside transporter, inner membrane su bunit AglF {ECO:0000313|EMBL:CDP52765.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
alpha-glucoside ABC transporter permease n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00030AD139
Displaying 22 items

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