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SCNpilot_expt_1000_bf_scaffold_1900_curated_1

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(3..1868)

Top 3 Functional Annotations

Value Algorithm Source
LysM protein LysM {ECO:0000313|EMBL:EYR78050.1}; EC=6.1.1.15 {ECO:0000313|EMBL:EYR78050.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 73.8
  • Coverage: 641.0
  • Bit_score: 862
  • Evalue 3.40e-247
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI000362B415 similarity UNIREF
DB: UNIREF100
  • Identity: 45.4
  • Coverage: 617.0
  • Bit_score: 426
  • Evalue 5.80e-116
  • rbh
peptidoglycan-binding lysin domain-containing protein similarity KEGG
DB: KEGG
  • Identity: 42.9
  • Coverage: 553.0
  • Bit_score: 346
  • Evalue 1.80e-92
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1866
ATGATGAAGAACAGGACCGGCCTTGTGGCGTTGATCGTGCTGGCGGTGGCGACGCTGCTCATGGTTTTCTTCGTGCTGCCCAACATGAACAAGGAAAAGCCCGCGCAAACGCCGGTCGCGACGATTGACGAAAAGCCGGCCGAGGGCGGCGGCGACACCGCGGCGGCAGGCGGCAAGCAGGCGCGCACGGGCGGCGAACAGGCGCCCGTCGAGGGCGAAAAGCCGGCCGCCGAACCTGCCGGCGAGCAGGCCGCCAAGCCGGAAGAGACCCCGGCCGATCCCGCCGCAAGCTGGGTCACGCCCGCCTTCGATGTCCTGCGTGTCGAGCCGGACGGCTCCACCGTCATCGCCGGCCGCGGCCAGCCGAACACGAAGCTGGAGATCAGGAACGGCGATACGGTGGTCGGCAAGGCCGATATCGGCCCGTCCGGCGATTTCGCTGCCGTCTTCGACCATCCGCTCGCCGCCGGCGACTATCAGCTCACCCTCGCCACCCGCGACGACAAGGGCGCCTCAAAGACCTCGGAAGAGGTCGCGACGGTGTCCGTGCCGAAGGACGGCAGCGGCGAGCTGCTCGCCATGGTGTCCCGCCCCGGCGAGGCGAGCCGTCTGATCACGGTGCCGGAAGCCGCCCGGAAGCCGGCCGGCGACGCCGCGCAAACGGCGCAGGCTGCCGCCGGCCAGGTCGCCGGTGACGTTGCCTCGGCGGCCGGCGATGTCGCCGCCACGGCGAACGAGACAGCCGCGGCCGCTGGCGAGGCCGCCGCCACGGCCAGCGATGCGGCCGCGACGGCCGGCGCGCAGGCGACGCTGCCGGCGGGTGAGGGCGCGCAGCCCTCTGCCGACACGGCGAACTCCGCCACGGCGGGCCCGGCCGCGCAGGCCCGCGTTTCCGCCGTCGAGCTGGAAGGCGAACGCATGTTCATCGCCGGCACGGCCCGGCCCGGCGCGCTGGTGCGCATCTATGCAGACGACAAGCTCGTCGGCGAGGCGAAGGCGGACGACGAGGGCCGCTATGTCGTCGACGGCAGGATCGACCTTTCCGTCGGCCGCCACACTGTCCGCGCCGACGTGATGAGCGCCGACGGCAGCAAGGTCGATTTCCGCGCCTCCGTTCCGTTCGACCGGCCGGAAGGCGAGCAGGTCGCCGTGGTGGCGCAGGACAATGCCGCCAGCGATGCCGGCCCGGCGCTCGGCCTCATCGGCGGCGGCACCTTCGACAAGCTGCGCACCGAGGCGGACAAGGCGATCGCCCTCCTCAAGGGCCTCTATGCAAACGGCCGCGTGCCGACCGCCGAGGAACTCGCCGCCGCCCGCTCGGCGACGGAGATCGCGCTGAAGTCGCTGGCCGAATTCAAGCCGGGCGAGGAAGAAGGCGAGGCTGCCCGCCAGATGGCCGCCAAGGCCTCCGCCGCTGCCGCCTCCGCACTCGCGCGCCTCCATGCCCTGCCGTCGGATGCCGCCGCCGTCGGCGAGGCGCTCGGCTCGATCGAGACGGCCGTGGCCGACGCGCTCGCGCCCGCGATCGAAAAGGCGCATGACGCGGCGGGCCACGTCGTCGCCGCGGCAGGCGACACCATCGAGTCGCTGGCCGGACAGGCGAGCGCGCTCCAGCAGAAGTTCGTGGCGCTCTTTTCCGATGGCGGCAACGCAACGACGGCGGATATCCGCAGCGCCCGCAGCGCGCTGGAAGGGGCCCTCAGGCGCATCACGGGCTTCACGCCGCCGGCCGGCACCGCTGCCGACGTCGGCGCGGCCATCGAGGAACTGAAGGGCTGGGCCGCCACCGCGCTCGACCGCCTCGCCGCCGTTCCCGCGGATGCCGGCAAGGAGGCCTACCAGCAGGCGCTGGTGGCGCTCGAAGGC
PROTEIN sequence
Length: 622
MMKNRTGLVALIVLAVATLLMVFFVLPNMNKEKPAQTPVATIDEKPAEGGGDTAAAGGKQARTGGEQAPVEGEKPAAEPAGEQAAKPEETPADPAASWVTPAFDVLRVEPDGSTVIAGRGQPNTKLEIRNGDTVVGKADIGPSGDFAAVFDHPLAAGDYQLTLATRDDKGASKTSEEVATVSVPKDGSGELLAMVSRPGEASRLITVPEAARKPAGDAAQTAQAAAGQVAGDVASAAGDVAATANETAAAAGEAAATASDAAATAGAQATLPAGEGAQPSADTANSATAGPAAQARVSAVELEGERMFIAGTARPGALVRIYADDKLVGEAKADDEGRYVVDGRIDLSVGRHTVRADVMSADGSKVDFRASVPFDRPEGEQVAVVAQDNAASDAGPALGLIGGGTFDKLRTEADKAIALLKGLYANGRVPTAEELAAARSATEIALKSLAEFKPGEEEGEAARQMAAKASAAAASALARLHALPSDAAAVGEALGSIETAVADALAPAIEKAHDAAGHVVAAAGDTIESLAGQASALQQKFVALFSDGGNATTADIRSARSALEGALRRITGFTPPAGTAADVGAAIEELKGWAATALDRLAAVPADAGKEAYQQALVALEG