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SCNpilot_expt_1000_bf_scaffold_1900_curated

Search features with annotation key words

Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1900_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1868)
DNA (1866bp) protein (622aa)
LysM protein LysM {ECO:0000313|EMBL:EYR78050.1}; EC=6.1.1.15 {ECO:0000313|EMBL:EYR78050.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI000362B415 rbh
peptidoglycan-binding lysin domain-containing protein rbh
SCNpilot_expt_1000_bf_scaffold_1900_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2044..2649
DNA (606bp) protein (202aa)
LOG family protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EXE7_9RHIZ rbh
LOG family protein {ECO:0000313|EMBL:EYR78049.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K06966 rbh
SCNpilot_expt_1000_bf_scaffold_1900_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2694..3638)
DNA (945bp) protein (315aa)
Protein RarD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWA7_9RHIZ rbh
Protein RarD {ECO:0000313|EMBL:EYR78047.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1900_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3747..3941)
DNA (195bp) protein (65aa)
Putative AIPM/hcit synthase family transferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D587_9RHIZ
Putative AIPM/hcit synthase family transferase {ECO:0000313|EMBL:EYR78046.1}; EC=2.3.3.- {ECO:0000313|EMBL:EYR78046.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
AIPM/hcit synthase family transferase (EC:2.3.3.-)
SCNpilot_expt_1000_bf_scaffold_1900_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4789..5331)
DNA (543bp) protein (181aa)
Putative AIPM/hcit synthase family transferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D587_9RHIZ
Putative AIPM/hcit synthase family transferase {ECO:0000313|EMBL:EYR78046.1}; EC=2.3.3.- {ECO:0000313|EMBL:EYR78046.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
leua1; 2-isopropylmalate synthase; K01649 2-isopropylmalate synthase [EC:2.3.3.13]
SCNpilot_expt_1000_bf_scaffold_1900_curated_6
unknown

Not on your lists

5622..5855
DNA (234bp) protein (78aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1900_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6357..6839)
DNA (483bp) protein (161aa)
Putative glutathione-dependent formaldehyde-activating protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EXE3_9RHIZ rbh
Putative glutathione-dependent formaldehyde-activating protein {ECO:0000313|EMBL:EYR78044.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
glutathione-dependent formaldehyde-activating protein
SCNpilot_expt_1000_bf_scaffold_1900_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6851..6970)
DNA (120bp) protein (40aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CG85_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR78043.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_1900_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6967..7464)
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWA3_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR78042.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
glutathione-dependent formaldehyde-activating protein
SCNpilot_expt_1000_bf_scaffold_1900_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7461..7943)
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D580_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR78041.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1900_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7940..9373)
DNA (1434bp) protein (478aa)
Cysteine--tRNA ligase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D0J0_9RHIZ rbh
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cysS; cysteinyl-tRNA synthetase (EC:6.1.1.16); K01883 cysteinyl-tRNA synthetase [EC:6.1.1.16] rbh
SCNpilot_expt_1000_bf_scaffold_1900_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9803..9985
DNA (183bp) protein (61aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CG82_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR78038.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_1900_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9990..10763)
DNA (774bp) protein (258aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CW98_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR78037.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1900_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10824..11258
DNA (435bp) protein (145aa)
Putative NUDIX family protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D575_9RHIZ
Putative NUDIX family protein {ECO:0000313|EMBL:EYR78036.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
NUDIX hydrolase
SCNpilot_expt_1000_bf_scaffold_1900_curated_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11255..11680
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D0I7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR78035.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1900_curated_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11785..12042
DNA (258bp) protein (86aa)
Uncharacterized protein {ECO:0000313|EMBL:EYR78034.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00036A7DB8
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1900_curated_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12059..12826
DNA (768bp) protein (256aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CMK4_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR78033.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1900_curated_18
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12813..13433)
DNA (621bp) protein (207aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00036E09D8
Uncharacterized protein {ECO:0000313|EMBL:EJL52418.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1900_curated_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13604..14449
DNA (846bp) protein (282aa)
Folate-binding protein YgfZ n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EFQ5_9RHIZ rbh
Folate-binding protein YgfZ {ECO:0000313|EMBL:EYR78030.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
aminomethyltransferase (glycine cleavage); K06980 rbh
SCNpilot_expt_1000_bf_scaffold_1900_curated_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14446..15075
DNA (630bp) protein (210aa)
Putative hydrolases of HD superfamily {ECO:0000313|EMBL:EYR78029.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hydrolase n=1 Tax=Rhizobium meliloti RepID=UPI00030F7F20 rbh
hypothetical protein; K06952 rbh
SCNpilot_expt_1000_bf_scaffold_1900_curated_21
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15078..15611
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BWT7_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR78028.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1900_curated_22
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15608..16585
DNA (978bp) protein (326aa)
Uncharacterized protein {ECO:0000313|EMBL:EYR78027.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein rbh
Uncharacterized protein n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A309_RHIFH rbh
SCNpilot_expt_1000_bf_scaffold_1900_curated_23
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16599..17120)
DNA (522bp) protein (174aa)
Superoxide dismutase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EZF7_9RHIZ
Superoxide dismutase [Cu-Zn] {ECO:0000256|RuleBase:RU000393}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000393};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
sodC; superoxide dismutase (EC:1.15.1.1); K04565 Cu/Zn superoxide dismutase [EC:1.15.1.1]
SCNpilot_expt_1000_bf_scaffold_1900_curated_24
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17187..18092)
DNA (906bp) protein (302aa)
Putative nicotinate-nucleotide pyrophosphorylase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CJ16_9RHIZ rbh
Putative nicotinate-nucleotide pyrophosphorylase {ECO:0000313|EMBL:EYR78024.1}; EC=2.4.2.19 {ECO:0000313|EMBL:EYR78024.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
nadC; nicotinate-mononucleotide pyrophosphorylase; K00767 nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] rbh
SCNpilot_expt_1000_bf_scaffold_1900_curated_25
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18132..19730)
DNA (1599bp) protein (533aa)
L-aspartate oxidase {ECO:0000256|RuleBase:RU362049}; EC=1.4.3.16 {ECO:0000256|RuleBase:RU362049};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
aspartate oxidase n=1 Tax=Rhizobium giardinii RepID=UPI0003767F07 rbh
nadB; L-aspartate oxidase (EC:1.4.3.16); K00278 L-aspartate oxidase [EC:1.4.3.16] rbh
SCNpilot_expt_1000_bf_scaffold_1900_curated_26
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19908..20987)
DNA (1080bp) protein (360aa)
Quinolinate synthase A {ECO:0000256|HAMAP-Rule:MF_00568}; EC=2.5.1.72 {ECO:0000256|HAMAP-Rule:MF_00568};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
quinolinate synthetase n=1 Tax=Rhizobium giardinii RepID=UPI00037D5029 rbh
nadA; quinolinate synthetase A; K03517 quinolinate synthase [EC:2.5.1.72] rbh
SCNpilot_expt_1000_bf_scaffold_1900_curated_27
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21159..22385)
DNA (1227bp) protein (409aa)
MFS permease n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CX20_9RHIZ rbh
MFS permease {ECO:0000313|EMBL:EYR84342.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
probabable MFS permease rbh
SCNpilot_expt_1000_bf_scaffold_1900_curated_28
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22688..23680
DNA (993bp) protein (331aa)
Magnesium transport protein CorA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D5Y6_9RHIZ rbh
Magnesium transport protein CorA {ECO:0000313|EMBL:EYR84341.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
magnesium Mg(2+) and cobalt Co(2+) transport protein (corA) rbh
SCNpilot_expt_1000_bf_scaffold_1900_curated_29
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23700..24545)
DNA (846bp) protein (282aa)
Fe-S protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EXY3_9RHIZ rbh
Fe-S protein {ECO:0000313|EMBL:EYR84339.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative Fe-S protein rbh
SCNpilot_expt_1000_bf_scaffold_1900_curated_30
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24625..25278)
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CH11_9RHIZ rbh
Putative HD superfamily hydrolase {ECO:0000313|EMBL:EYR84338.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
HD domain-containing protein; K06950 uncharacterized protein rbh
Displaying items 1-30 of 50 in total

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