name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_expt_1000_bf_scaffold_1900_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(3..1868)
|
LysM protein LysM {ECO:0000313|EMBL:EYR78050.1}; EC=6.1.1.15 {ECO:0000313|EMBL:EYR78050.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI000362B415
rbh
peptidoglycan-binding lysin domain-containing protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_1900_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
2044..2649
|
LOG family protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EXE7_9RHIZ
rbh
LOG family protein {ECO:0000313|EMBL:EYR78049.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K06966
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_1900_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2694..3638)
|
Protein RarD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWA7_9RHIZ
rbh
Protein RarD {ECO:0000313|EMBL:EYR78047.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_1900_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(3747..3941)
|
Putative AIPM/hcit synthase family transferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D587_9RHIZ
Putative AIPM/hcit synthase family transferase {ECO:0000313|EMBL:EYR78046.1}; EC=2.3.3.- {ECO:0000313|EMBL:EYR78046.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
AIPM/hcit synthase family transferase (EC:2.3.3.-)
|
|
SCNpilot_expt_1000_bf_scaffold_1900_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(4789..5331)
|
Putative AIPM/hcit synthase family transferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D587_9RHIZ
Putative AIPM/hcit synthase family transferase {ECO:0000313|EMBL:EYR78046.1}; EC=2.3.3.- {ECO:0000313|EMBL:EYR78046.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
leua1; 2-isopropylmalate synthase; K01649 2-isopropylmalate synthase [EC:2.3.3.13]
|
|
SCNpilot_expt_1000_bf_scaffold_1900_curated_6
unknown
|
Not on your lists |
5622..5855
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_1900_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(6357..6839)
|
Putative glutathione-dependent formaldehyde-activating protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EXE3_9RHIZ
rbh
Putative glutathione-dependent formaldehyde-activating protein {ECO:0000313|EMBL:EYR78044.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
glutathione-dependent formaldehyde-activating protein
|
|
SCNpilot_expt_1000_bf_scaffold_1900_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(6851..6970)
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CG85_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR78043.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
|
|
SCNpilot_expt_1000_bf_scaffold_1900_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(6967..7464)
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWA3_9RHIZ
rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR78042.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
glutathione-dependent formaldehyde-activating protein
|
|
SCNpilot_expt_1000_bf_scaffold_1900_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(7461..7943)
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D580_9RHIZ
rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR78041.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_1900_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(7940..9373)
|
Cysteine--tRNA ligase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D0J0_9RHIZ
rbh
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
|
|
SCNpilot_expt_1000_bf_scaffold_1900_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
9803..9985
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CG82_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR78038.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
|
|
SCNpilot_expt_1000_bf_scaffold_1900_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(9990..10763)
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CW98_9RHIZ
rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR78037.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_1900_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
10824..11258
|
Putative NUDIX family protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D575_9RHIZ
Putative NUDIX family protein {ECO:0000313|EMBL:EYR78036.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
NUDIX hydrolase
|
|
SCNpilot_expt_1000_bf_scaffold_1900_curated_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
11255..11680
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D0I7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR78035.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_1900_curated_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
11785..12042
|
Uncharacterized protein {ECO:0000313|EMBL:EYR78034.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00036A7DB8
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_1900_curated_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
12059..12826
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CMK4_9RHIZ
rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR78033.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_1900_curated_18
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(12813..13433)
|
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00036E09D8
Uncharacterized protein {ECO:0000313|EMBL:EJL52418.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_1900_curated_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
13604..14449
|
Folate-binding protein YgfZ n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EFQ5_9RHIZ
rbh
Folate-binding protein YgfZ {ECO:0000313|EMBL:EYR78030.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
aminomethyltransferase (glycine cleavage); K06980
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_1900_curated_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
14446..15075
|
Putative hydrolases of HD superfamily {ECO:0000313|EMBL:EYR78029.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hydrolase n=1 Tax=Rhizobium meliloti RepID=UPI00030F7F20
rbh
hypothetical protein; K06952
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_1900_curated_21
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
15078..15611
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BWT7_9RHIZ
rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR78028.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_1900_curated_22
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
15608..16585
|
Uncharacterized protein {ECO:0000313|EMBL:EYR78027.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
rbh
Uncharacterized protein n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A309_RHIFH
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_1900_curated_23
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(16599..17120)
|
Superoxide dismutase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EZF7_9RHIZ
Superoxide dismutase [Cu-Zn] {ECO:0000256|RuleBase:RU000393}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000393};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
|
|
SCNpilot_expt_1000_bf_scaffold_1900_curated_24
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(17187..18092)
|
Putative nicotinate-nucleotide pyrophosphorylase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CJ16_9RHIZ
rbh
Putative nicotinate-nucleotide pyrophosphorylase {ECO:0000313|EMBL:EYR78024.1}; EC=2.4.2.19 {ECO:0000313|EMBL:EYR78024.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
nadC; nicotinate-mononucleotide pyrophosphorylase; K00767 nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_1900_curated_25
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(18132..19730)
|
L-aspartate oxidase {ECO:0000256|RuleBase:RU362049}; EC=1.4.3.16 {ECO:0000256|RuleBase:RU362049};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
aspartate oxidase n=1 Tax=Rhizobium giardinii RepID=UPI0003767F07
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_1900_curated_26
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(19908..20987)
|
Quinolinate synthase A {ECO:0000256|HAMAP-Rule:MF_00568}; EC=2.5.1.72 {ECO:0000256|HAMAP-Rule:MF_00568};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
quinolinate synthetase n=1 Tax=Rhizobium giardinii RepID=UPI00037D5029
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_1900_curated_27
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(21159..22385)
|
MFS permease n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CX20_9RHIZ
rbh
MFS permease {ECO:0000313|EMBL:EYR84342.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
probabable MFS permease
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_1900_curated_28
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
22688..23680
|
Magnesium transport protein CorA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D5Y6_9RHIZ
rbh
Magnesium transport protein CorA {ECO:0000313|EMBL:EYR84341.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
magnesium Mg(2+) and cobalt Co(2+) transport protein (corA)
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_1900_curated_29
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(23700..24545)
|
Fe-S protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EXY3_9RHIZ
rbh
Fe-S protein {ECO:0000313|EMBL:EYR84339.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative Fe-S protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_1900_curated_30
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(24625..25278)
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CH11_9RHIZ
rbh
Putative HD superfamily hydrolase {ECO:0000313|EMBL:EYR84338.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
HD domain-containing protein; K06950 uncharacterized protein
rbh
|