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SCNpilot_expt_1000_bf_scaffold_9176_curated_2

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(1100..2536)

Top 3 Functional Annotations

Value Algorithm Source
Multidrug efflux transporter {ECO:0000313|EMBL:EYR79176.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 84.2
  • Coverage: 476.0
  • Bit_score: 780
  • Evalue 1.70e-222
Multidrug efflux transporter n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HL74_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 58.5
  • Coverage: 465.0
  • Bit_score: 544
  • Evalue 1.50e-151
  • rbh
major facilitator superfamily protein similarity KEGG
DB: KEGG
  • Identity: 56.8
  • Coverage: 475.0
  • Bit_score: 531
  • Evalue 3.10e-148
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1437
ATGTCCGACAGCATAACCGTTCCCAAGGAAGCCGCGCCGCGGCTTTCCAGCCTGTTCTCCCGCGCCTACCTGTTCGGCACGCTGATGCTCGGCGGCGGCATCATGCTGCATGCGGTGGAGACCTACATCACCGCGACGCTGATGCCCTCCATCGTGCGCGACATCGGCGGCCTTCCGCTCTTCGCCTGGGCGACGACGATCTATGTCGCGGCCTCGGTGCTCGGCTCGACCTTCGTCGCCGTCCGGCCGGAGGGCGTGACGCTGAACCGCTGCTATGTCATCGGCGCGGCGCTGTTCGGCATCGGCAGCCTCGTCTGCGCCATCGCGCCGACCATGGAGACGGTGCTCGTCGGCCGGGCGATCCAGGGGCTGGGCGCGGGCTTCCTCGTCGCGCTCGGCTATGCCTTCATCCGCTTCGTCTATCCCGAGCCGCTGTGGAGCACGGCGTCCACGCTCTATGCCGCCGCCTGGGGCATCGCCACCTTCCTCGGGCCGACCATCGGCGGCGTCTTCGCCGCCGGCAGCGCCTGGCGCGAGGCCTTCGCGTTGCTGGTGCCGCTCTCCATCCTCATGGCGCTCGCCGCGCCGAGGCTGCTGCCCTCCGGCGAGGGCGAACGGGTGACGACGAGGACGCCCTTCGCGCAGATCCTGCTGCTGGTGACGTCCGTCATCGTGCTTTCGCTCGCAAGCTCGGTGAGCGAACCGGCGCTGCGCGGCCTGCTGGCGGGCGCCGCCGTCGTCGGCGTCACCGCCGCCATCGCCATAGAGCGGCATGCCGAGGCACGCCTGCTGCCGGCCGGCACGATCCGCCTCGCCTCGCCGCTCGCCCGCGTCTACCTCATCATGCTCATGCTGCTGGTGACGGTCTGCTCCGATATCTACATCCCCTATTTCCTGCAGGTGCTGCATGGCGTGACGCCGCTGGTCTCGGGCTACCTCGTGGCGCTGCTGGCGCTCGGCTGGACGGCGGCGGCCTTCGCCACGGCGCGGCTGAGGGGCCGGAGCGCCAACCGGGTCATCGTCGCCGGCGCGGCGATGGAGGCGCTGGCGACGGCCCTCCTCGTCTTCACGCTCGCCCGGCACAATCCCGAAGGCGGCCTCCTGCCGCTTGGGACCGCCACGGTCTTCATCTTCCTCATGGGCTTCGGCATCGGCATGGGCTGGGCGCATCTCGTCACCCATGTCCTTCACCTCGCGCCGGCCGGCGAGACGGACAAGGCCTCGGCGGCGATCACCACCATGCAGGCGCTGGGCGCGGCCTTCGGGGCGGCGCTTGCCGGCATCATCGTCAATTCGACGGGACTGGTGAAGCCGGGCGGCATCGAAGGCGCATCGACGGCGGCGCACTGGCTCTACGCCCTGCTGGCGCTTCCGGCAGCGCTGGCGATCCTGCTCGCCGTGCGCCTGCCGCACGAACGGGCGGCGGCGCCCGATTGA
PROTEIN sequence
Length: 479
MSDSITVPKEAAPRLSSLFSRAYLFGTLMLGGGIMLHAVETYITATLMPSIVRDIGGLPLFAWATTIYVAASVLGSTFVAVRPEGVTLNRCYVIGAALFGIGSLVCAIAPTMETVLVGRAIQGLGAGFLVALGYAFIRFVYPEPLWSTASTLYAAAWGIATFLGPTIGGVFAAGSAWREAFALLVPLSILMALAAPRLLPSGEGERVTTRTPFAQILLLVTSVIVLSLASSVSEPALRGLLAGAAVVGVTAAIAIERHAEARLLPAGTIRLASPLARVYLIMLMLLVTVCSDIYIPYFLQVLHGVTPLVSGYLVALLALGWTAAAFATARLRGRSANRVIVAGAAMEALATALLVFTLARHNPEGGLLPLGTATVFIFLMGFGIGMGWAHLVTHVLHLAPAGETDKASAAITTMQALGAAFGAALAGIIVNSTGLVKPGGIEGASTAAHWLYALLALPAALAILLAVRLPHERAAAPD*