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SCNpilot_expt_1000_bf_scaffold_9176_curated

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_9176_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

487..1074
DNA (588bp) protein (196aa)
Phthiocerol synthesis polyketide synthase type I PpsC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D1W2_9RHIZ rbh
Phthiocerol synthesis polyketide synthase type I PpsC {ECO:0000313|EMBL:EYR79178.1}; EC=2.3.1.41 {ECO:0000313|EMBL:EYR79178.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
quinone oxidoreductase; K00344 NADPH2:quinone reductase [EC:1.6.5.5]
SCNpilot_expt_1000_bf_scaffold_9176_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1100..2536)
DNA (1437bp) protein (479aa)
Multidrug efflux transporter {ECO:0000313|EMBL:EYR79176.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Multidrug efflux transporter n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HL74_9RHIZ rbh
major facilitator superfamily protein rbh
SCNpilot_expt_1000_bf_scaffold_9176_curated_3
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2902..3327)
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF142 RepID=J2L6T7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJJ29227.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
glutathione-dependent formaldehyde-activating protein
SCNpilot_expt_1000_bf_scaffold_9176_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3401..4138)
DNA (738bp) protein (246aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVP7_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR79172.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_9176_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4220..5191
DNA (972bp) protein (324aa)
Putative L-asparaginase II protein {ECO:0000313|EMBL:EYR79171.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Putative L-asparaginase II protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D080_9RHIZ rbh
putative L-asparaginase II protein rbh
SCNpilot_expt_1000_bf_scaffold_9176_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5301..5696
DNA (396bp) protein (132aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ET41_9RHIZ
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:EYR79168.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K07032
SCNpilot_expt_1000_bf_scaffold_9176_curated_7
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5780..6466)
DNA (687bp) protein (229aa)
hypothetical protein
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000369D994
Uncharacterized protein {ECO:0000313|EMBL:ABS16875.1}; Flags: Precursor;; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
SCNpilot_expt_1000_bf_scaffold_9176_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6564..6908)
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVQ0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR79167.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_9176_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6963..7187)
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D083_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR79166.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_9176_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7729..8190
DNA (462bp) protein (154aa)
Transcriptional regulator {ECO:0000313|EMBL:EYR79165.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Transcriptional regulator n=1 Tax=Rhizobium sp. CF142 RepID=J2L4W2_9RHIZ
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_9176_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8150..8809)
DNA (660bp) protein (220aa)
Glutathione S-transferase Gst n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D082_9RHIZ
Glutathione S-transferase Gst {ECO:0000313|EMBL:EYR79164.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
glutathione S-transferase; K00799 glutathione S-transferase [EC:2.5.1.18]
SCNpilot_expt_1000_bf_scaffold_9176_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9058..9429
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D909_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR79163.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_9176_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9567..10061
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5F0C5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR79161.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_9176_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10155..11528)
DNA (1374bp) protein (458aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ES84_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR79159.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_9176_curated_15
unknown

Not on your lists

comp(12442..12573)
DNA (132bp) protein (44aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_9176_curated_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13093..14046
DNA (954bp) protein (318aa)
Diguanylate cyclase/phosphodiesterase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CAB9_9RHIZ rbh
Diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:EYR79158.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase rbh
SCNpilot_expt_1000_bf_scaffold_9176_curated_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14110..14544
DNA (435bp) protein (145aa)
Transcriptional regulator {ECO:0000313|EMBL:EYR79156.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Transcriptional regulator, MarR family protein n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8AFQ9_RHIRD
MarR family transcriptional regulator
Displaying 17 items

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