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SCNpilot_expt_1000_bf_scaffold_6416_curated_1

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 2..1093

Top 3 Functional Annotations

Value Algorithm Source
Penicillin-binding protein 1C {ECO:0000313|EMBL:EYR84170.1}; EC=2.4.2.- {ECO:0000313|EMBL:EYR84170.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 93.4
  • Coverage: 363.0
  • Bit_score: 688
  • Evalue 4.00e-195
penicillin-binding protein; K05367 penicillin-binding protein 1C [EC:2.4.1.-] similarity KEGG
DB: KEGG
  • Identity: 77.7
  • Coverage: 363.0
  • Bit_score: 592
  • Evalue 1.10e-166
  • rbh
Penicillin-binding protein 1C n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM597 RepID=I9WYQ4_RHILT similarity UNIREF
DB: UNIREF100
  • Identity: 77.4
  • Coverage: 363.0
  • Bit_score: 592
  • Evalue 2.10e-166
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1092
GGCTGGGTCGACATGACGCGCATCCGCCGCTCGCCCGGCTCGGCGCTGAAGCCGTTCATCTACGGCCTCGCCTTCGAGGAGGGCCTCGTCGCGCAGGAGACCATCGTCGAGGATCGTCCCGCCGACTTCTCCGGCTATCGCCCGCGCAATTTCGACATGACCTACCAGGGCGACATCAGCGTGCGCAAGGCCCTGCAACTGTCCCTCAACGTGCCCGCCGTGCGCCTGCTCGACGCCGTCGGCCCGACGCGGCTGATGGTGCGCTTCCGCCGCGCCGAGGTGCGGCCGGAGCTGCCGCCGGGCGAGACGCCCGGCCTTGCCATCGGCCTCGGCGGCCTCGGCATCACGCTGCGCGACCTCACCCAGCTCTATGCGGCGCTCGCCAATCGCGGCATGCCGGTCCGGCTCGGCGACGGCATCACGGGGGATGCGGCCGTCATCGACGGCGATCCGCTGCTCGATCCTGTCGCCGTCTGGCATGTCTCGGACGTGCTGTCCGGCGTCATCCCGCCGACGGGCAGCCGCCGGCTCGGCATCGCCTACAAGACCGGCACGAGCTACGGCTACCGCGACGCCTGGTCGATTGGATACGACGGCCGGCATGTGCTCGGCGTCTGGGTCGGCCGCGCCGACAACGGTGCCGTGCCGGGCCTGACGGGCTACGGCGCCGCCGCGCCCATCCTCTTCGAAGCCTTCTCGCGCTCCGGCGTCGCCATCACCGCGCTGCCGCACGCGCCGGCGGGCGCGGTACGCATCGCGCAATCGGAACTGCCGGCGAGCATGCGCCGCTTCTCCACCACCGCGAACGGCCTCGTCGCGACCGCCGGGCGCGAGCCGGCGCCGGAGATCGTCTATCCGCCGGAAGGCGCCCATGTGGAGCTCGGCGCGACGGCCGGCGCGGAAATCTCACCCCTCATCCTGAAGCTCCAGGGCGGCCGCGCACCCTTCCGCTGGCTCGCCAACGGCAAGGTCCTGCCCGACGCCGCGCGCCGGCGCACGACGCAGTGGACGCCGGAGGGCGCGGGCTTCTCGACGCTGACGGTGATCGACGCCGCCGGGCGGGCGGCAAGCGTGCGGGTGTTCATCGAGTAG
PROTEIN sequence
Length: 364
GWVDMTRIRRSPGSALKPFIYGLAFEEGLVAQETIVEDRPADFSGYRPRNFDMTYQGDISVRKALQLSLNVPAVRLLDAVGPTRLMVRFRRAEVRPELPPGETPGLAIGLGGLGITLRDLTQLYAALANRGMPVRLGDGITGDAAVIDGDPLLDPVAVWHVSDVLSGVIPPTGSRRLGIAYKTGTSYGYRDAWSIGYDGRHVLGVWVGRADNGAVPGLTGYGAAAPILFEAFSRSGVAITALPHAPAGAVRIAQSELPASMRRFSTTANGLVATAGREPAPEIVYPPEGAHVELGATAGAEISPLILKLQGGRAPFRWLANGKVLPDAARRRTTQWTPEGAGFSTLTVIDAAGRAASVRVFIE*