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SCNpilot_expt_1000_bf_scaffold_6416_curated

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6416_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..1093
DNA (1092bp) protein (364aa)
Penicillin-binding protein 1C {ECO:0000313|EMBL:EYR84170.1}; EC=2.4.2.- {ECO:0000313|EMBL:EYR84170.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
penicillin-binding protein; K05367 penicillin-binding protein 1C [EC:2.4.1.-] rbh
Penicillin-binding protein 1C n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM597 RepID=I9WYQ4_RHILT rbh
SCNpilot_expt_1000_bf_scaffold_6416_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1748..2548)
DNA (801bp) protein (267aa)
Hydroxymethylglutaryl-CoA lyase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWV2_9RHIZ rbh
Hydroxymethylglutaryl-CoA lyase {ECO:0000313|EMBL:EYR83401.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
enoyl-CoA hydratase; K13766 methylglutaconyl-CoA hydratase [EC:4.2.1.18] rbh
SCNpilot_expt_1000_bf_scaffold_6416_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2545..3420)
DNA (876bp) protein (292aa)
Hydroxymethylglutaryl-CoA lyase MvaB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CMP4_9RHIZ rbh
Hydroxymethylglutaryl-CoA lyase MvaB {ECO:0000313|EMBL:EYR83400.1}; EC=4.1.3.4 {ECO:0000313|EMBL:EYR83400.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
mvaB; hydroxymethylglutaryl-CoA lyase (EC:4.1.3.4); K01640 hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] rbh
SCNpilot_expt_1000_bf_scaffold_6416_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5417..5800)
DNA (384bp) protein (128aa)
Endoribonuclease L-PSP n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ERJ4_9RHIZ
Endoribonuclease L-PSP {ECO:0000313|EMBL:EYR83398.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
endoribonuclease L-PSP
SCNpilot_expt_1000_bf_scaffold_6416_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5813..6766)
DNA (954bp) protein (318aa)
Carboxyl transferase family protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C8P1_9RHIZ rbh
Carboxyl transferase family protein {ECO:0000313|EMBL:EYR83397.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
propionyl-CoA carboxylase; K01969 3-methylcrotonyl-CoA carboxylase beta subunit [EC:6.4.1.4] rbh
SCNpilot_expt_1000_bf_scaffold_6416_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7389..8165)
DNA (777bp) protein (259aa)
Acyl-CoA dehydrogenase AcdA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CPI6_9RHIZ rbh
Acyl-CoA dehydrogenase AcdA {ECO:0000313|EMBL:EYR83396.1}; EC=1.3.99.- {ECO:0000313|EMBL:EYR83396.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
acyl-CoA dehydrogenase domain-containing protein; K00253 isovaleryl-CoA dehydrogenase [EC:1.3.8.4] rbh
SCNpilot_expt_1000_bf_scaffold_6416_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8686..9846)
DNA (1161bp) protein (387aa)
Fumarylacetoacetate (FAA) hydrolase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D0M8_9RHIZ rbh
Fumarylacetoacetate (FAA) hydrolase {ECO:0000313|EMBL:EYR83393.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative fumarylacetoacetate rbh
SCNpilot_expt_1000_bf_scaffold_6416_curated_8
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10185..10676)
DNA (492bp) protein (164aa)
integrase n=1 Tax=Rhizobium mongolense RepID=UPI0003B49EE4
phage integrase family protein
Phage integrase family protein {ECO:0000313|EMBL:AFL48854.1}; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
SCNpilot_expt_1000_bf_scaffold_6416_curated_9
unknown

Not on your lists

comp(12270..12449)
DNA (180bp) protein (60aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6416_curated_10
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12577..12846
DNA (270bp) protein (90aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A121_RHIFH
Uncharacterized protein {ECO:0000313|EMBL:CCE94922.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
SCNpilot_expt_1000_bf_scaffold_6416_curated_11
unknown

Not on your lists

14193..14852
DNA (660bp) protein (220aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6416_curated_12
Labrenzia aggregata, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15086..15814
DNA (729bp) protein (243aa)
Uncharacterized protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0P3S9_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EAV40335.1}; TaxID=384765 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia aggregata (strain ATCC 25650 / DSM 13394 / JCM 20685 / NBRC; 16684 / NCIMB 2208 / IAM 12614) (Stappia aggregata).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6416_curated_13
unknown

Not on your lists

15818..16129
DNA (312bp) protein (104aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6416_curated_14
Labrenzia aggregata, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16129..17379
DNA (1251bp) protein (417aa)
Peptidase U7 n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0P3T6_9RHOB rbh
Peptidase U7 {ECO:0000313|EMBL:EAV40342.1}; TaxID=384765 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia aggregata (strain ATCC 25650 / DSM 13394 / JCM 20685 / NBRC; 16684 / NCIMB 2208 / IAM 12614) (Stappia aggregata).;"
peptidase S49 rbh
SCNpilot_expt_1000_bf_scaffold_6416_curated_15
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17738..18076
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HZJ7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EPE98441.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
SCNpilot_expt_1000_bf_scaffold_6416_curated_16
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18246..19103
DNA (858bp) protein (286aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SJ01_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:AHB50065.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
phage-related tail protein
SCNpilot_expt_1000_bf_scaffold_6416_curated_17
Labrenzia aggregata, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19103..20617
DNA (1515bp) protein (505aa)
Phage-related tail protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0P3T2_9RHOB rbh
Phage-related tail protein {ECO:0000313|EMBL:EAV40338.1}; TaxID=384765 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia aggregata (strain ATCC 25650 / DSM 13394 / JCM 20685 / NBRC; 16684 / NCIMB 2208 / IAM 12614) (Stappia aggregata).;"
phage-related tail protein rbh
SCNpilot_expt_1000_bf_scaffold_6416_curated_18
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20921..21919
DNA (999bp) protein (333aa)
Phage late control D family protein n=1 Tax=Ochrobactrum intermedium M86 RepID=M5K2K4_9RHIZ
Phage late control D family protein {ECO:0000313|EMBL:ELT51104.1}; TaxID=1234597 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium M86.;"
phage late control D family protein; K06905
Displaying 18 items

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