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SCNpilot_expt_1000_bf_scaffold_6416_curated_3

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(2545..3420)

Top 3 Functional Annotations

Value Algorithm Source
Hydroxymethylglutaryl-CoA lyase MvaB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CMP4_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 85.9
  • Coverage: 283.0
  • Bit_score: 467
  • Evalue 8.20e-129
  • rbh
Hydroxymethylglutaryl-CoA lyase MvaB {ECO:0000313|EMBL:EYR83400.1}; EC=4.1.3.4 {ECO:0000313|EMBL:EYR83400.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 85.9
  • Coverage: 283.0
  • Bit_score: 467
  • Evalue 1.10e-128
mvaB; hydroxymethylglutaryl-CoA lyase (EC:4.1.3.4); K01640 hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] similarity KEGG
DB: KEGG
  • Identity: 73.3
  • Coverage: 281.0
  • Bit_score: 407
  • Evalue 4.10e-111
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 876
ATGAGGCGGCGCATCGAGATCGTGGAAATGGCGGCCCGTGACGGCCTGCAGAACGAGAAGGCGACCATTCTGGCCGCCGACAAGATCGCGCTGATCGCCCTCCTGTCCGCCTGCGGCTTCCGGCGCATCGAGGCGACGAGCTTCGTCAGCCCGAAATGGGTGCCGCAGCTTGCCGACGGCGCCGAGGTGATGGCCGGCATCCGGCGACGGCCGGGCGTTTCCTATTCGGCGCTGGTGCCCAACATGAAGGGCTACGAGGCGGCGCGGGCGGCCCGGGCAGACGAGGTCGCCGTCTTCCTCTCTGCCTCCGAGGGCTTTTCGCGCGCCAATCTCAACTGCTCGATCGCCGAGAGCATCGAACGCGCCCGCCCGGTGGCGGAGGCGGCGCGGCGCGACGGCATTGCGCTGCGCGGCTATGTCAGCTGCGTCGTGCGCTGCCCCTATGACGGGCCGGTCGCGCCGCAGGCCGTGGCGGAGGTCGCCCGCCAGCTCCTCGACCTCGGCTGCCATGAGGTGAGCCTCGGCGACACGATCGGGCGCGGCTGGCCAAGCGAGGTGGCGGCCATGCTGGAGGCGGTGCTCGCCATCGCCGCGCCGGAAAACCTCGCCGGCCATTTTCACGATACGAGCGGAATGGCGCTCGACAATATCCGCGTCGCGCTCGATCATGGGCTGTCCGTCTTCGACGCCTCGGTCGGCGGGCTCGGCGGCTGCCCCTTCGCGCCCGGCGCGCGCGGCAATGTGGATACGCTCGCCGTCGCCGACATGCTGGCCGAGACGGACTACGAGACGGGGCTCGACCCGGAAAAGCTTGCCGCTGCCGCGGCCTTCGCCCGCCGCATCACCGGCATGCATCATGAGGAGGTGCAGCCATGA
PROTEIN sequence
Length: 292
MRRRIEIVEMAARDGLQNEKATILAADKIALIALLSACGFRRIEATSFVSPKWVPQLADGAEVMAGIRRRPGVSYSALVPNMKGYEAARAARADEVAVFLSASEGFSRANLNCSIAESIERARPVAEAARRDGIALRGYVSCVVRCPYDGPVAPQAVAEVARQLLDLGCHEVSLGDTIGRGWPSEVAAMLEAVLAIAAPENLAGHFHDTSGMALDNIRVALDHGLSVFDASVGGLGGCPFAPGARGNVDTLAVADMLAETDYETGLDPEKLAAAAAFARRITGMHHEEVQP*