ggKbase home page

SCNpilot_expt_1000_bf_scaffold_6416_curated_4

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(5417..5800)

Top 3 Functional Annotations

Value Algorithm Source
Endoribonuclease L-PSP n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ERJ4_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 86.6
  • Coverage: 127.0
  • Bit_score: 230
  • Evalue 1.30e-57
Endoribonuclease L-PSP {ECO:0000313|EMBL:EYR83398.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 86.6
  • Coverage: 127.0
  • Bit_score: 230
  • Evalue 1.80e-57
endoribonuclease L-PSP similarity KEGG
DB: KEGG
  • Identity: 72.4
  • Coverage: 127.0
  • Bit_score: 192
  • Evalue 7.00e-47

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 384
ATGAAACGCGAATCGATCAATGCCAAAAATGCACCCGCCCCGCGCGGCGGCTATTCGCAGGCCGTGAAGATCGAGGATTTCAAGACGCTGGTCTTCGTCAGCGGCCAGATCCCCGTCTCGGACGACGACAAGGTGCCGGAGACGTTCGAGGACCAGGCCCGGCTCGTCTGGCGCAATGTCGACGCGCAACTGAAGGCGGCGGGCATGACGAAGGCGGACCTCGTCAAGGTCACGACCTTCCTCTCCGACCGGCACCACGCCACCGCCAACCGCGAGATCCGCAGCGAATATCTCGGCGCCCTCGCGCCGGCGATGAGCGTCGTCATCACCTCGATCTTCGACGGAAAATGGCTGCTGGAAGTCGAAGCCGTCGCAGCCCAGTGA
PROTEIN sequence
Length: 128
MKRESINAKNAPAPRGGYSQAVKIEDFKTLVFVSGQIPVSDDDKVPETFEDQARLVWRNVDAQLKAAGMTKADLVKVTTFLSDRHHATANREIRSEYLGALAPAMSVVITSIFDGKWLLEVEAVAAQ*