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SCNpilot_expt_1000_bf_scaffold_16245_curated_5

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(2263..3288)

Top 3 Functional Annotations

Value Algorithm Source
Sugar ABC transporter permease n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CNI3_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 93.4
  • Coverage: 244.0
  • Bit_score: 462
  • Evalue 4.00e-127
  • rbh
Sugar ABC transporter permease {ECO:0000313|EMBL:EYR80669.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 93.4
  • Coverage: 244.0
  • Bit_score: 462
  • Evalue 5.70e-127
sugar ABC transporter permease; K02025 multiple sugar transport system permease protein similarity KEGG
DB: KEGG
  • Identity: 86.5
  • Coverage: 244.0
  • Bit_score: 446
  • Evalue 9.40e-123
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1026
ATGACGGGCCAGGCACATACCGGCCGCCCAGCCAGGCTTTTTCGCAATCTCAACGCCAAGATCGCCTCCATTCCGATGGTGCTGACCGCCGTCGTGATCTTTCTCGGCGGCACGATCTGGACGGTCGTCTATTCGTTCACCAATTCCAAGCTGCTCCCGCGCGCCAAGTTCGTCGGCCTCGACCAGTACGAGCGGCTGTGGGATGCGCCGCGCTGGATCGTCTCGATCCAGAATCTTGCTATCTACGGCGTCCTGACGCTGGTCTTCAGTCTGGTGATGGGCTTCGTGCTGGCGGCGCTGATGGACCAGAAGATCCGCTTCGAGAACACGTTCCGCACGATCTTCCTCTATCCCTTCGCGCTCTCCTTCATCGTCACCGGCCTCGTCTGGCAATGGCTTCTCAACCCGGAATACGGCGTGCAGTCCGTCGTGCGCGCGCTCGGCTGGGAGAGCTTCGCCTTCGACCCGCTCTATAATTCGAAGATCGTCATCTACGGCGTGCTGATCGCCGGGCTGTGGCAGGGCACGGGTCTCGTCATGTGCCTGCTGCTGGCGGGCCTGCGCGGCATCGACGAGGACATCTGGAAGGCCGCGCGCGTCGACGGCATCCCGATGTGGCGGACCTATCTCTTCATCGTCATCCCCATGATGCGCCCCGTCTTCATCACCACGCTCGTCATCATCGCGAGCGGCATCGTCAAGGTCTACGACCTCGTGGTGGCGCAGACCAGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTACGACTACATGTTCCAGGCCCAGAATCTCGGCCAGGGTATCGCCGCCTCCACCATGATGCTCGTCACGGTCGCCATCATCATCGTGCCATGGGCCTATCTCGAATTCGGAGGGCGCAAGCGTGGCTGACACCGCTTCTCTCAAGGCTGCCGCCGAGCCGTGGGGCGCAAAACCCCGCCGTGCGCTTTCCGGCCGCAACATCATGCTCTACGGCACGCTTCTCGTCGCGGCGCTCTATTACCTGCTGCCGCTCTACGTGA
PROTEIN sequence
Length: 342
MTGQAHTGRPARLFRNLNAKIASIPMVLTAVVIFLGGTIWTVVYSFTNSKLLPRAKFVGLDQYERLWDAPRWIVSIQNLAIYGVLTLVFSLVMGFVLAALMDQKIRFENTFRTIFLYPFALSFIVTGLVWQWLLNPEYGVQSVVRALGWESFAFDPLYNSKIVIYGVLIAGLWQGTGLVMCLLLAGLRGIDEDIWKAARVDGIPMWRTYLFIVIPMMRPVFITTLVIIASGIVKVYDLVVAQTSXXXXXXXXXXXLRLHVPGPESRPGYRRLHHDARHGRHHHRAMGLSRIRRAQAWLTPLLSRLPPSRGAQNPAVRFPAATSCSTARFSSRRSITCCRST*