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SCNpilot_expt_1000_bf_scaffold_16245_curated_7

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 5182..6003

Top 3 Functional Annotations

Value Algorithm Source
HTH-type transcriptional regulator AglR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EQG9_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 89.4
  • Coverage: 274.0
  • Bit_score: 477
  • Evalue 1.30e-131
  • rbh
Transcriptional regulator LacI family {ECO:0000313|EMBL:EYR80667.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 89.4
  • Coverage: 274.0
  • Bit_score: 477
  • Evalue 1.80e-131
periplasmic binding protein/LacI transcriptional regulator; K02529 LacI family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 74.9
  • Coverage: 271.0
  • Bit_score: 403
  • Evalue 7.30e-110
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 822
ATGGACAGAATGAAAAGCGGGGGCCGGGCGGCATCGACGCCCCCCTCCAGCGAACGGCCGACGCTGAAGACCATCGCCTTCATGACCGGCCTCGGCATCACCACCGTTTCGCGGGCGTTGAAGGATGCGCCCGACATCAGCAGCGAGACGAAGGAGCGCGTGCGCCTCGTCGCCCGGCAGATCGGCTACCAGCCGAACAGGGCGGGCGTGCGCCTTCGCACCGGCAAGACCAATGTCATCAGCCTGATCCTCAGCCTGGAAGAGGAGATCATGGGCCTGACGAGCCCCATGGTCGTCGGCATCTCGGAAGTGCTCGCCGCAACGCAGTACCATCTCGTGGTAACGCCCTACCGCACGCAGGGCAATGCGCTCGATCCGGTGCGCTACGTGCTGGAAACGGGCGCGGCCGACGGCGTGATCATCTCGCGCACCGAGCCGAAGGACCCGCGCGTCGCGCTGATGATGGAGCGCAACTTCCCCTTCGTCACGCATGGCCGCACCGAGATGGGCCTTGCCCATCCCTATCACGACTTCGACAACGAGCGCTTCGCCTACGAGGCCGTGCGCAAGCTGGTCGAGCTCGGCCGCAAGCGCCTGGTGCTGCTCCAGCCGCCGCCCTACCTCACCTTCTACCTGCACATGCGGGCGGGCTTCGAGAAGGGCATCCGCGACTTCGGCGCGACGGCCCTGCCCTTCAACATCGTCAACCTCGACAACAATCTTCGCGAGATCCGCGGCGCCGCAGAGGCGCTGTTCGACGCCGCCGACGGGCCTGACGGCATCGTCTCCGGCAGCGGCTCGGGCGCGGTGGCGCTGATCGCG
PROTEIN sequence
Length: 274
MDRMKSGGRAASTPPSSERPTLKTIAFMTGLGITTVSRALKDAPDISSETKERVRLVARQIGYQPNRAGVRLRTGKTNVISLILSLEEEIMGLTSPMVVGISEVLAATQYHLVVTPYRTQGNALDPVRYVLETGAADGVIISRTEPKDPRVALMMERNFPFVTHGRTEMGLAHPYHDFDNERFAYEAVRKLVELGRKRLVLLQPPPYLTFYLHMRAGFEKGIRDFGATALPFNIVNLDNNLREIRGAAEALFDAADGPDGIVSGSGSGAVALIA