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SCNpilot_expt_1000_bf_scaffold_4631_curated_5

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(2628..3779)

Top 3 Functional Annotations

Value Algorithm Source
Ribonuclease D n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZH5_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 92.7
  • Coverage: 383.0
  • Bit_score: 702
  • Evalue 2.00e-199
  • rbh
Ribonuclease D {ECO:0000256|HAMAP-Rule:MF_01899}; Short=RNase D {ECO:0000256|HAMAP-Rule:MF_01899};; EC=3.1.13.5 {ECO:0000256|HAMAP-Rule:MF_01899};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 92.7
  • Coverage: 383.0
  • Bit_score: 702
  • Evalue 2.80e-199
rnd; ribonuclease D; K03684 ribonuclease D [EC:3.1.13.5] similarity KEGG
DB: KEGG
  • Identity: 76.9
  • Coverage: 381.0
  • Bit_score: 605
  • Evalue 1.00e-170
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1152
ATGCAGATCATCGACACGACCGCAGCCCTTCGCGACGCCTGTGAGACACTCTCCCGTTCCGAGTATCTGACCGTTGACACGGAGTTCCTGCGGGAGACGACCTTCTGGCCGGAGCTCTGCCTGATCCAGCTTGCCGGTCCCGAGATCGAGGTGATCGTCGATCCGCTCGCCAGGGACATCGACCTCCAGCCCTTCTTCGAACTGATGGCCAACCCGGCCGTGCTGAAGGTGTTCCATGCCGCCCGGCAGGATATCGAGATCGTCTTCAACCGCGGCAACCTCATCCCGCACCCGATCTTCGACACGCAGGTCGCCGCCATGGTCTGCGGCTTCGGCGACAGCGTGTCCTACGACCAGCTCGTGCAGAAGATAAAGGGCGTGCACATCGACAAGTCCTCGCGCTTCACCGACTGGAGCCGCCGGCCGCTCACCGAAAAGCAGCTCGAATATGCGCTGGCCGACGTCACCCACCTGCGCGACGTCTATCTCGCGCTCAAGGAGAAGCTGGAAAGCGCCGGCCGCTCGCTGTGGCTGACCGAGGAAATGGCGGTGCTGGAATCGCGCGAGACCTACGACCTGCATCCGGACGACGCCTGGCGGCGGCTCAAGATGCGCGTCAAGAAGCCGGTGGAGCTTGCCGTCCTGCAGAAGGTCGCCGCCTGGCGCGAACGCGAGGCGCGCGGGCGCAACGTGCCGCGCTCGCGCATCCTGAAGGACGACACGATCTACGAGATCGCCCAGCAGCAGCCGGCCGACGCCGAGGCGCTGGCCCGCCTCCGCACCATTCCCAAGGGCTGGGAGCGCTCGCAGTCCGGCGCCGCCTTGCTTGAGGCCATCAACGAGGCCCTCGCCATCCCCAAGGCCGACCTGCCGCGCCTGCCGCGCCAGAACCATGTGCCGGAGGGCGCCGCCGCCGCCAGCGAGATGCTGAAGGTGCTCCTGAAGATCGTCGCCGAGAAGGAAGGCGTCGCGGCCAAGATCATCGCCAATTCCGACGATCTCGAGAAGATCGCCGTCGACGGCGAGGCCGCCGAGGTGCCGGCGCTGCACGGCTGGCGCCGCGACCTCTTCGGCGACACCGCGCTCAACCTCATCGGCGGCAAGGTGGCGCTTCGCTTCGTCGACAGGAAGATCGAGGCGGTGGAGCTCTGA
PROTEIN sequence
Length: 384
MQIIDTTAALRDACETLSRSEYLTVDTEFLRETTFWPELCLIQLAGPEIEVIVDPLARDIDLQPFFELMANPAVLKVFHAARQDIEIVFNRGNLIPHPIFDTQVAAMVCGFGDSVSYDQLVQKIKGVHIDKSSRFTDWSRRPLTEKQLEYALADVTHLRDVYLALKEKLESAGRSLWLTEEMAVLESRETYDLHPDDAWRRLKMRVKKPVELAVLQKVAAWREREARGRNVPRSRILKDDTIYEIAQQQPADAEALARLRTIPKGWERSQSGAALLEAINEALAIPKADLPRLPRQNHVPEGAAAASEMLKVLLKIVAEKEGVAAKIIANSDDLEKIAVDGEAAEVPALHGWRRDLFGDTALNLIGGKVALRFVDRKIEAVEL*