ggKbase home page

SCNpilot_expt_1000_bf_scaffold_4631_curated

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4631_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..709
DNA (708bp) protein (236aa)
Ppx/GppA phosphatase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZI1_9RHIZ
Ppx/GppA phosphatase {ECO:0000313|EMBL:EYR80809.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ppx; exopolyphosphatase (EC:3.6.1.11); K01524 exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
SCNpilot_expt_1000_bf_scaffold_4631_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

718..1314
DNA (597bp) protein (199aa)
Putative secreted Zn-dependent protease n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CUY3_9RHIZ rbh
Putative secreted Zn-dependent protease {ECO:0000313|EMBL:EYR80808.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4631_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1324..2154)
DNA (831bp) protein (277aa)
AraC family transcriptional regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CAJ6_9RHIZ rbh
AraC family transcriptional regulator {ECO:0000313|EMBL:EYR80806.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
AraC family transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_4631_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2216..2623
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQD4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80805.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4631_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2628..3779)
DNA (1152bp) protein (384aa)
Ribonuclease D n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZH5_9RHIZ rbh
Ribonuclease D {ECO:0000256|HAMAP-Rule:MF_01899}; Short=RNase D {ECO:0000256|HAMAP-Rule:MF_01899};; EC=3.1.13.5 {ECO:0000256|HAMAP-Rule:MF_01899};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
rnd; ribonuclease D; K03684 ribonuclease D [EC:3.1.13.5] rbh
SCNpilot_expt_1000_bf_scaffold_4631_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3932..4354)
DNA (423bp) protein (141aa)
Peroxiredoxin, Ohr subfamily {ECO:0000313|EMBL:EYR80798.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Peroxiredoxin, Ohr subfamily n=1 Tax=Rhizobium sp. CF080 RepID=J2I9J7_9RHIZ
ohr; Organic hydroperoxide resistance protein-like 2
SCNpilot_expt_1000_bf_scaffold_4631_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4468..4959
DNA (492bp) protein (164aa)
Putative MarR family transcriptional regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZH1_9RHIZ
Putative MarR family transcriptional regulator {ECO:0000313|EMBL:EYR80799.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative MarR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_4631_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5059..6528
DNA (1470bp) protein (490aa)
Sensor protein FixL n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQD1_9RHIZ rbh
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
sensor histidine kinase protein (EC:2.7.13.3)
SCNpilot_expt_1000_bf_scaffold_4631_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6528..6995
DNA (468bp) protein (156aa)
Sensor protein FixL n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQD1_9RHIZ
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
PAS/PAC sensor signal transduction histidine kinase
SCNpilot_expt_1000_bf_scaffold_4631_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6997..7374
DNA (378bp) protein (126aa)
Response regulator receiver protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CAJ1_9RHIZ
Response regulator receiver protein {ECO:0000313|EMBL:EYR80801.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
response regulator receiver protein
SCNpilot_expt_1000_bf_scaffold_4631_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7772..9013
DNA (1242bp) protein (414aa)
Major facilitator superfamily MFS_1 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ESE8_9RHIZ rbh
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:EYR80802.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
major facilitator superfamily transporter rbh
SCNpilot_expt_1000_bf_scaffold_4631_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9098..10483
DNA (1386bp) protein (462aa)
Multicopper oxidase type 3 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CUX8_9RHIZ rbh
Multicopper oxidase type 3 {ECO:0000313|EMBL:EYR80803.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
multicopper oxidase type 3 rbh
SCNpilot_expt_1000_bf_scaffold_4631_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10548..10925
DNA (378bp) protein (126aa)
Transcriptional regulator, XRE family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CDS9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80795.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transcriptional regulator, XRE family
SCNpilot_expt_1000_bf_scaffold_4631_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10885..11634
DNA (750bp) protein (250aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CN60_9RHIZ rbh
RES domain-containing protein {ECO:0000313|EMBL:EYR80794.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
RES domain family protein rbh
Displaying 14 items

View Taxonomy