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SCNpilot_expt_1000_bf_scaffold_8806_curated_2

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(719..1246)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 58.8
  • Coverage: 165.0
  • Bit_score: 192
  • Evalue 1.30e-46
RNA polymerase sigma factor n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3KLN6_RHISN similarity UNIREF
DB: UNIREF100
  • Identity: 58.8
  • Coverage: 165.0
  • Bit_score: 192
  • Evalue 4.00e-46
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 58.8
  • Coverage: 165.0
  • Bit_score: 192
  • Evalue 5.60e-46

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Taxonomy

Sinorhizobium fredii → Sinorhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 528
ATGGCCCTGCCGCAGCACCGCTTGCCGGATGAAGAGCCCCTGCCCCTGAAGGAGCGGGTGGCCGACCTGATACCGGCGCTGCGCGCCTTCGCGCGGTCCTTCACGCTCGATCCGAGCGACGGCGACGATCTCGTGCAGGAGACCCTGATGCGCGCGCTGAGAAGCCTGGACAGCTTTCATCCCGGCACAAGCCTGAAGTCGTGGCTCTTCACCATCATGCGCAACACCTACTACACGCAATATCGCAAGAGGATGCGGGAAGGTCCGGGCGCGAAGGCGTGCGTTTCCGCCCAGCCGGCCATGCCGGCGAACCAGGAATGGTCGGCCGCCGAACGCGAGGTGCAGGCGGCGTTCGGCCGCCTTGGCGAGGACCAGCGGCAGATTCTCGTCCTCGTCGCCGCCCTCGGCTTCAGCTACGAGGAAGCGGCCTGCGTGATGGGATGCGCCATCGGCACGGTCAAGAGCCGGCTGAGCCGGGCAAGGGAGGCGCTCACGCGGGAATTGGGCGGCAACCCGCTAACGCCATAG
PROTEIN sequence
Length: 176
MALPQHRLPDEEPLPLKERVADLIPALRAFARSFTLDPSDGDDLVQETLMRALRSLDSFHPGTSLKSWLFTIMRNTYYTQYRKRMREGPGAKACVSAQPAMPANQEWSAAEREVQAAFGRLGEDQRQILVLVAALGFSYEEAACVMGCAIGTVKSRLSRAREALTRELGGNPLTP*