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SCNpilot_expt_1000_bf_scaffold_8806_curated_17

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 9890..11788

Top 3 Functional Annotations

Value Algorithm Source
Mechanosensitive ion channel MscS n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EV79_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 85.7
  • Coverage: 628.0
  • Bit_score: 1062
  • Evalue 0.0
  • rbh
Mechanosensitive ion channel MscS {ECO:0000313|EMBL:EYR77824.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 85.7
  • Coverage: 628.0
  • Bit_score: 1062
  • Evalue 0.0
potassium efflux system KEFA similarity KEGG
DB: KEGG
  • Identity: 61.3
  • Coverage: 604.0
  • Bit_score: 754
  • Evalue 3.00e-215
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1899
GTGACGGCCTGGCTGCAATTCGTCTGGAAGTTCAAGCGCATGCAGCTTCTGGGCGCGGTGACTCTGTCGCTGATGGCCGCCCTGGTGCTGCTCTCCGGCAGCTACCGGCTGTTCTCGCCCTATATCACCCGCGCCGCCCGGCAGGAGAAGCCGCACTATATCACGCGCCTTTCCGTCGCCTTCTGGTCGACGATCCTGCCGACGATGGCCGCGGGCGCCTTCGCGGGGGCAAGCTACTTCTTCCTCGACGCCTTCAAGGTGCTGCGCACCGACATCGCGCCGATCGTCGCCATCGCGCTCGGCGTGGTGGTCGCGGTCTATTTCGTCGCGCAGCTCGCCAATGCGGTGCTCTCGCCGGGCGACGGACACTGGCGGCTGGTGCGGGTTTCCGACCGCGGGGCGCGGCGGCTGTGGCTGCTGATCTTCAGCATGGCGATCGTCAACGGGGCGGACTATTTCCTCGGCACGATCAGCGAGGGGCTCGGCTCGCCCGTGGTGCTGACGGTGGTGAAGAGCTTCTTCGCCTCGATCGTCATTGGCGTACTGCTCGTCGTCACCGCCTTCGTCAAGCCCGTGCTGCACCGCGGCGAGCCGCCGGATTCGCCGGGGCGTCCATGNNNNNNNNNNNNNNNNGTCCTCCTGATCCTGATCGGCCTCGGCCTCGTGCTCTCCTCGCTGCTCGGCTATGTCGGCATGGCGCGGTTCGTCGCCACGCAGATCGTAGTGACGGGCGCGGTGGTGGTGACGATGTATATCGGCTTCCTCTCCGGCCGCGCCGTCTCGGCGACGAACGCCTTTGCCGAAACGGCGGTCGGCAAGCGGCTGGAGGAGCGGTTCGGCCTCGGCCAGGTGGCGCTCGACCAGATCGGGCTTGCGGCGGGGCTGGCGATCTATCTGCTGATCTTCGTGTTCTTCGTGCCGCTGATCCTGCTGCAATGGGGCTTTCAGGTCGCCGACATCGAATCCTGGGCCTACCGCATCTTCACGGAAATCCGCATCGGCACCATCACCATATCGCTGGTGGGGATCCTGGCGGGCATCGTCCTCTTCGTCGTCGGCCTCGTCGTCACGCGCTGGTTCCAGAAATGGGTGGACGGCAACGTGCTGGCGCGCAGCCAGGTCGATGCCGGCGTGCGCAATTCCGTGCGCACCGCGGTCGGCTATGCCGGGGTGGCGCTTGCCGGCCTCGTCGGCATATCGGCGGCGGGCATCAACCTTTCCAGCCTCGCGCTCGTCGCCGGTGCCCTCTCGCTCGGTATCGGTTTCGGCCTGCAGAACATCGTGTCGAACTTCGTGTCGGGCCTCATCCTGCTTGCCGAACGCCCCTTCAAGGTGGGCGACTGGGTGGTGGCGGGCACGACGGAAGGCTTCGTTCGCCGCATTTCCGTGCGCGCCACGGAGATCGAGACCTTCCAGCGCCAGACGGTGATCGTGCCGAACTCCGTGCTCATCAACGGGCAGGTCGGCAACTGGACGCACCGCAACAAGCTCGGCCGCGTCGAGGTGGCGATCAGCGTCCATGCCGGCAACGATCCGCGCCTGGTGCAGGAGCTTCTGGCGGAGGTCGTGCGCGCGCAGCAGGGCCTCCTGCGCAATCCCGAGCCGACGGTGGTGTTCCAGGCCTTTTCCGCGGCGACGCTCGATTTCGAGATCCGCGCCTTCCTTGCGGACATTCTCAACGGCACCGGCGTCAAGTCGGAACTGCGCGCCGCCATCCTCGAGCGCTTCCGCGCCGAGAACATCGCCATCGGCGGGCCGGCCGCGCCGGAGGTGCCCGTCAAGATTTCGAAGGAGGGCGCCGAACTCATCACCGCGCTTCTCGACCAGGCGACGCAGAAGGTTCGCCCGGCCGGCGGTCGAAAGCGTCGCGGCCCGGACGAGGAGACGGCGAAGACCTGA
PROTEIN sequence
Length: 633
VTAWLQFVWKFKRMQLLGAVTLSLMAALVLLSGSYRLFSPYITRAARQEKPHYITRLSVAFWSTILPTMAAGAFAGASYFFLDAFKVLRTDIAPIVAIALGVVVAVYFVAQLANAVLSPGDGHWRLVRVSDRGARRLWLLIFSMAIVNGADYFLGTISEGLGSPVVLTVVKSFFASIVIGVLLVVTAFVKPVLHRGEPPDSPGRPXXXXXXVLLILIGLGLVLSSLLGYVGMARFVATQIVVTGAVVVTMYIGFLSGRAVSATNAFAETAVGKRLEERFGLGQVALDQIGLAAGLAIYLLIFVFFVPLILLQWGFQVADIESWAYRIFTEIRIGTITISLVGILAGIVLFVVGLVVTRWFQKWVDGNVLARSQVDAGVRNSVRTAVGYAGVALAGLVGISAAGINLSSLALVAGALSLGIGFGLQNIVSNFVSGLILLAERPFKVGDWVVAGTTEGFVRRISVRATEIETFQRQTVIVPNSVLINGQVGNWTHRNKLGRVEVAISVHAGNDPRLVQELLAEVVRAQQGLLRNPEPTVVFQAFSAATLDFEIRAFLADILNGTGVKSELRAAILERFRAENIAIGGPAAPEVPVKISKEGAELITALLDQATQKVRPAGGRKRRGPDEETAKT*