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SCNpilot_expt_1000_bf_scaffold_8273_curated_3

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(794..2776)

Top 3 Functional Annotations

Value Algorithm Source
HTH-type transcriptional repressor CytR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXE4_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 98.8
  • Coverage: 336.0
  • Bit_score: 654
  • Evalue 1.10e-184
  • rbh
HTH-type transcriptional repressor CytR {ECO:0000313|EMBL:EYR80548.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 98.8
  • Coverage: 336.0
  • Bit_score: 654
  • Evalue 1.50e-184
pckR; putative phosphoenolpyruvate carboxykinase regulator transcription regulator protein similarity KEGG
DB: KEGG
  • Identity: 93.2
  • Coverage: 336.0
  • Bit_score: 627
  • Evalue 5.80e-177
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1983
GTGGCACAGAAAATCAAGCTTTCCACCATCGCGGAGACGCTCGGCGTTTCCACGGCGACGGTATCGCTTGCGCTGAGGGACAGTCCTCTTGTCGCCGCTGCGACGCGGGACCGGATCAAGGAACAGGCACGCGCGCTCGGCTATATCTACAACCGCCGCGCGGCGAGCCTTCGCACCTCCCGCTCGGGCATCATCGGCGTCGTCGTGCACGACATCATGAACCCGTTCTATGCGGAAATCCTCAAAGCCATCGAGAGCGAGCTCGATCGCGACCGGCAGACCTTCATCCTCTCCAACCACTACGATTCGGTCGAGAAGCAGCGCAATTTCGTCGAGACGCTGCTGCAGCTCGGCGGCGACGGGGTGATCATGTCGCCGGCCATCGGCACGCCGCCGGAGGACATCCAGCTTGCCGAGGACAACGGTATGCCGGCGATCCTGATCGCGCGCTCCATCGACGGCCTCGACGTGCCGATCTTCCGCGGCGACGACAGCTACGGCATCTCGCTCGCCACGAACCACCTGATCGGCCTCGGCCACCGCACCATCGCCATGGTGGGCGGCACGGACCAGACGTCCACCGGGCGCGACCGCTACCAGGGCTATGTCAACGCGCTGCGCAAGGCCAATATCGAGGTCGATCCCGGCCTTCGCATCCCGGGCCCCCGCACCAAGCAGGGCGGCTTCGAGGCGGCGGTGCATTTCCTCTCGCTGCCGCAGAAGCCGACGGCGGCCGTCTGCTGGAACGACCTCGTGGCCATCGGCCTCATGAACGGCATCGCCCGCGCCGGCCTCGTGCCCGGCCGCGACGTCTCCGTCACCGGCTATGACGACCTGGAGGAGGCGGCGATCGCGACGCCCGCCCTCACCACCGTCTGGAACGGCCAGTCGGAGGTCGGGCGCAACGCCGCCCGCGCGCTGCTCGACAAGCTCTCCGGCAGCCACGAGCCTGACGGCATCCATCTCATCAAGCCGGAAATGCGCATCCGGCAATCGACCGGACCGCTGAANNNNNNNNNNNNNNNGACACGCATTCTCGTGCCCGGCACGATCCGCGAGCGGGTGCTCGATCGTCTGAGGGAGGGCTTCGACGTCGTGCGCATCGACCGGGCGGATCCCTCCCTTCTCGCCCGCTCCGAGGCGGCGAGCATTTCGGGCGTTGCCGTTTCGGGCAGCTTCGGCGCTGCGATGATCGAGCACCTGCCTTCGCTGGAGATCATCGCGAGCTTCGGCGTCGGCTATGACGGCATCGACGTGCAGGCCGCCGCCGGGCGCGGCATCGCCGTCACCAACACGCCGGACGTGCTGAACGACGAGGTGGCGGATACCGCCATCGGGCTCCTCATCAACACCGTGCGCCGCCTGCCGCAGGCGGAGGCGTGGCTGCGCGAGGNNNNNNGGAAGCGCGAGGGCGCCTTCCCGCTGACGCCGCTCAGCCTGCGCGGGCGCAAGGCCGGCATCTATGGCCTCGGCCGCATCGGCCTTGCCATCGCCGAGCGGCTGAAAGGCTTCGGCATCGAGATCGCCTATCACACGCGCCGGCCGCACGAGGGCGTGCCCTATGCCTACCATCCGTCCCTGACGGCGCTCGCCGAGGCCGTCGACATCCTGATCGCCATCGTGCCAAAAACGCCGGAGACGCACAGGACGATCGACGCGGCGATCCTGCGGGCGCTCGGGGCAAACGGCGTGCTGATCAATGTCGGGCGCGGCTGGACGGTGGACGAGGCGGCGCTGGCCGCGGCGCTGGAGGACGGCGTGATCGCCGCCGCGGGTCTCGACGTGTTCTACGACGAGCCGAACGTGCCGGAGGCGCTGCTCGCCCAGCCGAACGCCACGCTGCTGCCGCATGTCGCCTCCGCCTCGGTCGTGACGCGCGATGCCATGGCCGATCTCGTGGTGGACAATCTCTTTTCCTGGTTCGGCAGGGGCGCCGCGTTGACGCCGGTGCCGGAAACGCCCTTTACGCGAAAAACGGGGTAG
PROTEIN sequence
Length: 661
VAQKIKLSTIAETLGVSTATVSLALRDSPLVAAATRDRIKEQARALGYIYNRRAASLRTSRSGIIGVVVHDIMNPFYAEILKAIESELDRDRQTFILSNHYDSVEKQRNFVETLLQLGGDGVIMSPAIGTPPEDIQLAEDNGMPAILIARSIDGLDVPIFRGDDSYGISLATNHLIGLGHRTIAMVGGTDQTSTGRDRYQGYVNALRKANIEVDPGLRIPGPRTKQGGFEAAVHFLSLPQKPTAAVCWNDLVAIGLMNGIARAGLVPGRDVSVTGYDDLEEAAIATPALTTVWNGQSEVGRNAARALLDKLSGSHEPDGIHLIKPEMRIRQSTGPLXXXXXXTRILVPGTIRERVLDRLREGFDVVRIDRADPSLLARSEAASISGVAVSGSFGAAMIEHLPSLEIIASFGVGYDGIDVQAAAGRGIAVTNTPDVLNDEVADTAIGLLINTVRRLPQAEAWLREXXXKREGAFPLTPLSLRGRKAGIYGLGRIGLAIAERLKGFGIEIAYHTRRPHEGVPYAYHPSLTALAEAVDILIAIVPKTPETHRTIDAAILRALGANGVLINVGRGWTVDEAALAAALEDGVIAAAGLDVFYDEPNVPEALLAQPNATLLPHVASASVVTRDAMADLVVDNLFSWFGRGAALTPVPETPFTRKTG*