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SCNpilot_expt_1000_bf_scaffold_8273_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_8273_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..303
DNA (303bp) protein (101aa)
Gamma-glutamyl-gamma-aminobutyrate hydrolase PuuD {ECO:0000313|EMBL:EYR80543.1}; EC=3.5.1.94 {ECO:0000313|EMBL:EYR80543.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
glutamine amidotransferase n=1 Tax=Rhizobium giardinii RepID=UPI00036750C2
glutamine amidotransferase; K07010 putative glutamine amidotransferase
SCNpilot_expt_1000_bf_scaffold_8273_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(308..712)
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C7I2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80546.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_8273_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(794..2776)
DNA (1983bp) protein (661aa)
HTH-type transcriptional repressor CytR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXE4_9RHIZ rbh
HTH-type transcriptional repressor CytR {ECO:0000313|EMBL:EYR80548.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
pckR; putative phosphoenolpyruvate carboxykinase regulator transcription regulator protein rbh
SCNpilot_expt_1000_bf_scaffold_8273_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2833..3354)
DNA (522bp) protein (174aa)
Transcriptional regulator, MarR family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CSU8_9RHIZ
Transcriptional regulator, MarR family {ECO:0000313|EMBL:EYR80549.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
MarR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_8273_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3446..4237
DNA (792bp) protein (264aa)
Putative creatinine amidohydrolase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EQA1_9RHIZ rbh
Putative creatinine amidohydrolase {ECO:0000313|EMBL:EYR80550.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
creatinine amidohydrolase rbh
SCNpilot_expt_1000_bf_scaffold_8273_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4337..5461
DNA (1125bp) protein (375aa)
Putative GTPase {ECO:0000313|EMBL:EYR80551.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cobalamin synthesis protein P47K rbh
Cobalamin synthesis protein P47K n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UD67_SINMW rbh
SCNpilot_expt_1000_bf_scaffold_8273_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5493..6482
DNA (990bp) protein (330aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EPC9_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR80552.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_8273_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6555..6854)
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWL5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80554.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_8273_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7215..8240
DNA (1026bp) protein (342aa)
Uncharacterized protein {ECO:0000313|EMBL:EYR80555.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
conserved exported protein of unknown function
Uncharacterized protein n=1 Tax=Rhizobium sp. IRBG74 RepID=U4Q8G1_9RHIZ
SCNpilot_expt_1000_bf_scaffold_8273_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8245..8691)
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CP31_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80556.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_8273_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8935..9624)
DNA (690bp) protein (230aa)
Outer membrane protein {ECO:0000313|EMBL:EYR80558.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI000380FD5F rbh
hypothetical protein; K07275 outer membrane protein rbh
SCNpilot_expt_1000_bf_scaffold_8273_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9813..10013)
DNA (201bp) protein (67aa)
Putative acetyltransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EFQ9_9RHIZ
Putative acetytransferase {ECO:0000313|EMBL:EYR80559.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
acetyltransferase
SCNpilot_expt_1000_bf_scaffold_8273_curated_13
unknown

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10185..10442
DNA (258bp) protein (86aa)

This feature has no annotations

Displaying 13 items

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