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SCNpilot_BF_INOC_scaffold_1962_curated

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_1962_curated_1
Caldicellulosiruptor saccharolyticus, Caldicellulosiruptor, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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3..389
DNA (387bp) protein (129aa)
Amino acid-binding ACT domain protein n=1 Tax=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) RepID=A4XL50_CALS8
amino acid-binding ACT domain-containing protein
Amino acid-binding ACT domain protein {ECO:0000313|EMBL:ABP67635.1}; TaxID=351627 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Caldicellulosiruptor.;" source="Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903 /; Tp8T 6331).;"
SCNpilot_BF_INOC_scaffold_1962_curated_2
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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499..1254
DNA (756bp) protein (252aa)
Exodeoxyribonuclease III {ECO:0000313|EMBL:EJF42663.1}; EC=3.1.11.2 {ECO:0000313|EMBL:EJF42663.1};; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
exodeoxyribonuclease III Xth (EC:4.2.99.18) rbh
Exodeoxyribonuclease III n=1 Tax=Clostridium sp. MSTE9 RepID=J1HBD5_9CLOT rbh
SCNpilot_BF_INOC_scaffold_1962_curated_3
unknown

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1363..1527
DNA (165bp) protein (55aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1962_curated_4
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1657..1812)
DNA (156bp) protein (52aa)
Uncharacterized protein n=1 Tax=Clostridium termitidis CT1112 RepID=S0FU70_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMS72063.1}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_1962_curated_5
Ruminococcus sp. CAG:724, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1955..2170
DNA (216bp) protein (72aa)
Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii SL3/3 RepID=D4K9L9_9FIRM
Protein of unknown function (DUF1653).
Uncharacterized protein {ECO:0000313|EMBL:CCZ20145.1}; TaxID=1262966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:724.;"
SCNpilot_BF_INOC_scaffold_1962_curated_6
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2197..2778
DNA (582bp) protein (194aa)
Putative cyclase n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I6K7_9FIRM
Putative cyclase {ECO:0000313|EMBL:CDB42109.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
cyclase family protein
SCNpilot_BF_INOC_scaffold_1962_curated_7
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2840..3769)
DNA (930bp) protein (310aa)
Polysaccharide deacetylase n=1 Tax=Eubacterium sp. CAG:180 RepID=R5MM90_9FIRM
Polysaccharide deacetylase {ECO:0000313|EMBL:CCY92880.1}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
Predicted xylanase/chitin deacetylase
SCNpilot_BF_INOC_scaffold_1962_curated_8
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4212..5297)
DNA (1086bp) protein (362aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13) RepID=D4LCR8_RUMC1
Protein of unknown function (DUF3048).
Uncharacterized protein {ECO:0000313|EMBL:CBL17413.1}; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
SCNpilot_BF_INOC_scaffold_1962_curated_9
Ethanoligenens harbinense, Ethanoligenens, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5435..5698)
DNA (264bp) protein (88aa)
30S ribosomal protein S20 n=1 Tax=Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033 / YUAN-3) RepID=E6U764_ETHHY
30S ribosomal protein S20
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=663278 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ethanoligenens.;" source="Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033; / YUAN-3).;"
SCNpilot_BF_INOC_scaffold_1962_curated_10
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5893..6753
DNA (861bp) protein (287aa)
Germination protease {ECO:0000256|HAMAP-Rule:MF_00626}; EC=3.4.24.78 {ECO:0000256|HAMAP-Rule:MF_00626};; GPR endopeptidase {ECO:0000256|HAMAP-Rule:MF_00626}; Germination proteinase {ECO:0000256|HAMAP-Rule:MF_00626}; Spore protease {ECO:0000256|HAMAP-Rule:MF_00626}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
spore protease (EC:3.4.24.78)
Germination protease n=1 Tax=Clostridium sp. CAG:413 RepID=R6NPL6_9CLOT rbh
SCNpilot_BF_INOC_scaffold_1962_curated_11
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6889..8001
DNA (1113bp) protein (371aa)
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI000367DFC2
Stage II sporulation protein P {ECO:0000313|EMBL:EJF42158.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
spoIIP; Stage II sporulation protein P
SCNpilot_BF_INOC_scaffold_1962_curated_12
unknown

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8022..8378
DNA (357bp) protein (119aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1962_curated_13
Dethiobacter alkaliphilus, Dethiobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8362..8973)
DNA (612bp) protein (204aa)
Transcriptional regulator, TetR family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GK69_9FIRM
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EEG76252.1}; TaxID=555088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Syntrophomonadaceae; Dethiobacter.;" source="Dethiobacter alkaliphilus AHT 1.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_1962_curated_14
Clostridiales bacterium oral taxon 876, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9112..9597)
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Clostridiales bacterium oral taxon 876 str. F0540 RepID=U2CY34_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERI95459.1}; TaxID=1321778 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium oral taxon 876 str. F0540.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_1962_curated_15
Caldicellulosiruptor kronotskyensis, Caldicellulosiruptor, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(9578..11005)
DNA (1428bp) protein (476aa)
Amino acid transporter-like protein n=1 Tax=Caldicellulosiruptor kronotskyensis (strain DSM 18902 / VKM B-2412 / 2002) RepID=E4SE16_CALK2 rbh
amino acid transporter-like protein rbh
Amino acid transporter-like protein {ECO:0000313|EMBL:ADQ45303.1}; TaxID=632348 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Caldicellulosiruptor.;" source="Caldicellulosiruptor kronotskyensis (strain DSM 18902 / VKM B-2412 /; 2002).;"
SCNpilot_BF_INOC_scaffold_1962_curated_16
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11306..11941
DNA (636bp) protein (212aa)
Phosphate propanoyltransferase {ECO:0000256|PIRNR:PIRNR010130}; EC=2.3.1.222 {ECO:0000256|PIRNR:PIRNR010130};; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
Phosphate propanoyltransferase n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EC81_9CLOT
Propanediol utilization protein
SCNpilot_BF_INOC_scaffold_1962_curated_17
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11990..12511)
DNA (522bp) protein (174aa)
ATP:corrinoid adenosyltransferase BtuR/CobO/CobP n=1 Tax=Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033 / YUAN-3) RepID=E6U2U0_ETHHY
ATP:corrinoid adenosyltransferase BtuR/CobO/CobP
ATP:corrinoid adenosyltransferase BtuR/CobO/CobP {ECO:0000313|EMBL:CDZ23559.1}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
SCNpilot_BF_INOC_scaffold_1962_curated_18
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12504..13178)
DNA (675bp) protein (225aa)
Phosphoglycerate mutase family protein n=2 Tax=Clostridium RepID=A7VWE8_9CLOT
Phosphoglycerate mutase family protein {ECO:0000313|EMBL:CDC04403.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
phosphoglycerate mutase
SCNpilot_BF_INOC_scaffold_1962_curated_19
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13312..13971
DNA (660bp) protein (220aa)
DNA-binding helix-turn-helix protein n=2 Tax=Clostridium RepID=A7VWE7_9CLOT
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EDO60094.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
helix-turn-helix domain-containing protein
SCNpilot_BF_INOC_scaffold_1962_curated_20
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14015..14578)
DNA (564bp) protein (188aa)
Iron only hydrogenase large subunit n=1 Tax=Clostridium termitidis CT1112 RepID=S0FK07_9CLOT
Iron only hydrogenase large subunit {ECO:0000313|EMBL:EMS70646.1}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
hydrogenase large subunit domain-containing protein
Displaying 20 items

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