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SCNpilot_BF_INOC_scaffold_2498_curated

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_2498_curated_1
Halococcus hamelinensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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2..913
DNA (912bp) protein (304aa)
Uncharacterized protein n=2 Tax=Halococcus hamelinensis RepID=M0M920_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA41109.1}; TaxID=1132509 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus hamelinensis 100A6.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_2498_curated_2
Clostridium bornimense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1071..1676)
DNA (606bp) protein (202aa)
azoR2; FMN-dependent NADH-azoreductase 2 (EC:1.7.-.-)
FMN-dependent NADH-azoreductase {ECO:0000256|HAMAP-Rule:MF_01216}; EC=1.7.-.- {ECO:0000256|HAMAP-Rule:MF_01216, ECO:0000313|EMBL:CDM67556.1};; Azo-dye reductase {ECO:0000256|HAMAP-Rule:MF_01216}; FMN-dependent NADH-azo compound oxidoreductase {ECO:0000256|HAMAP-Rule:MF_01216}; TaxID=1216932 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium bornimense.;"
FMN-dependent NADH-azoreductase n=3 Tax=Dehalobacter RepID=K4KQD0_9FIRM
SCNpilot_BF_INOC_scaffold_2498_curated_3
Lachnospiraceae bacterium 28-4, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1694..1987)
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 28-4 RepID=R9J7E8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS30119.1}; TaxID=397287 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 28-4.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_2498_curated_4
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2039..2929)
DNA (891bp) protein (297aa)
Iron(III) dicitrate transport ATP-binding protein fecE n=1 Tax=Clostridium botulinum D str. 1873 RepID=C5VSQ3_CLOBO
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KGM99179.1}; TaxID=1443128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum C/D str. DC5.;"
iron compound ABC transporter substrate-binding protein
SCNpilot_BF_INOC_scaffold_2498_curated_5
Anaerotruncus sp. CAG:390, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2938..3168)
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. CAG:390 RepID=R7ES11_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE05058.1}; TaxID=1262703 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:390.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_2498_curated_6
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3330..4040
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PHT0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS09048.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
phosphatase
SCNpilot_BF_INOC_scaffold_2498_curated_7
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4150..4863
DNA (714bp) protein (238aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
Ribulose-phosphate 3-epimerase n=1 Tax=Clostridium sp. CAG:413 RepID=R6NWD4_9CLOT
ribulose-phosphate 3-epimerase
SCNpilot_BF_INOC_scaffold_2498_curated_8
unknown

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5308..5613
DNA (306bp) protein (102aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_2498_curated_9
unknown

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5675..6019
DNA (345bp) protein (115aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_2498_curated_10
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6053..6490)
DNA (438bp) protein (146aa)
Deoxyuridine 5'-triphosphate nucleotidohydrolase {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071038}; Short=dUTPase {ECO:0000256|HAMAP-Rule:MF_00116};; EC=3.6.1.23 {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071036};; dUTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00116}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
deoxyuridine 5'-triphosphate nucleotidohydrolase (EC:3.6.1.23)
Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EJ94_9CLOT
SCNpilot_BF_INOC_scaffold_2498_curated_11
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6493..8547)
DNA (2055bp) protein (685aa)
Peptidase U32 family n=1 Tax=Ruminococcus sp. CAG:488 RepID=R5YV44_9FIRM rbh
Peptidase U32 family {ECO:0000313|EMBL:CDA20482.1}; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:488.;"
hypothetical protein rbh
SCNpilot_BF_INOC_scaffold_2498_curated_12
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8548..8892)
DNA (345bp) protein (115aa)
Cell division protein ZapA n=1 Tax=Clostridium sp. MSTE9 RepID=J0WZM7_9CLOT
Cell division protein ZapA {ECO:0000256|SAAS:SAAS00072473}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_2498_curated_13
Firmicutes bacterium CAG:227, Firmicutes, Bacteria

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9397..9774
DNA (378bp) protein (126aa)
Bacterial transferase hexapeptide repeat protein n=1 Tax=Firmicutes bacterium CAG:227 RepID=R6V2Y1_9FIRM
Bacterial transferase hexapeptide repeat protein {ECO:0000313|EMBL:CDC91400.1}; TaxID=1263010 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:227.;"
putative UDP-N-acetylglucosamine diphosphorylase
SCNpilot_BF_INOC_scaffold_2498_curated_14
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


9983..10411
DNA (429bp) protein (143aa)
50S ribosomal protein L13 n=1 Tax=Clostridium sp. CAG:352 RepID=R6RSA7_9CLOT
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|RuleBase:RU003878}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
50S ribosomal protein L13
SCNpilot_BF_INOC_scaffold_2498_curated_15
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


10429..10827
DNA (399bp) protein (133aa)
30S ribosomal protein S9 n=1 Tax=Clostridium sp. CAG:413 RepID=R6NEF1_9CLOT
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003816}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
SSU ribosomal protein S9P
SCNpilot_BF_INOC_scaffold_2498_curated_trna_1
unknown

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10896..10969
DNA (74bp)
transferRNA Arg
SCNpilot_BF_INOC_scaffold_2498_curated_16
Eubacterium sp. 3_1_31, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11126..11815)
DNA (690bp) protein (230aa)
Putative uncharacterized protein n=1 Tax=Eubacterium sp. 3_1_31 RepID=H1BK07_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO85441.1}; TaxID=457402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium sp. 3_1_31.;"
SCNpilot_BF_INOC_scaffold_2498_curated_17
unknown

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comp(11812..12429)
DNA (618bp) protein (206aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_2498_curated_18
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12459..13460)
DNA (1002bp) protein (334aa)
Probable fimbrial assembly protein, putative n=1 Tax=Clostridium novyi (strain NT) RepID=A0PZ82_CLONN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDZ25027.1}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
SCNpilot_BF_INOC_scaffold_2498_curated_19
Ethanoligenens harbinense, Ethanoligenens, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13663..14871)
DNA (1209bp) protein (403aa)
Type II secretion system F domain n=1 Tax=Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033 / YUAN-3) RepID=E6U304_ETHHY rbh
Type II secretion system F domain rbh
Type II secretion system F domain {ECO:0000313|EMBL:ADU26371.1}; TaxID=663278 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ethanoligenens.;" source="Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033; / YUAN-3).;"
SCNpilot_BF_INOC_scaffold_2498_curated_20
DS1215_Thermoanaerobacter_34_5835, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15153..15647)
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Bacillus sp. 17376 RepID=V6T0B7_9BACI
hypothetical protein
Tax=DS1215_Thermoanaerobacter_34_5835
SCNpilot_BF_INOC_scaffold_2498_curated_21
unknown

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comp(15728..16237)
DNA (510bp) protein (170aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_2498_curated_22
Firmicutes bacterium CAG:466, Firmicutes, Bacteria

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16358..16558
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:466 RepID=R6PW71_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC28653.1}; TaxID=1263025 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:466.;"
SCNpilot_BF_INOC_scaffold_2498_curated_23
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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16572..17183
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MNM0_9CLOT rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AGF59489.1}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
Displaying 24 items

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