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scnpilot_solids2_trim150_scaffold_1654

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1654_1
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..743)
DNA (741bp) protein (247aa)
hypothetical protein id=12497067 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_solids2_trim150_scaffold_1654_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(746..1762)
DNA (1017bp) protein (339aa)
Similar to plasmid-like sex pilus assembly and synthesis protein traU id=1311306 bin=GWE1_T_denit_62_9 species=Thauera phenylacetica genus=Thauera taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
traU; hypothetical protein; K12060 conjugal transfer pilus assembly protein TraU
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_solids2_trim150_scaffold_1654_3
Edwardsiella ictaluri, Edwardsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1759..2487)
DNA (729bp) protein (243aa)
hypothetical protein id=12497069 bin=THIO_MID species=Edwardsiella ictaluri genus=Edwardsiella taxon_order=Enterobacteriales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACR67577.1}; TaxID=634503 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Edwardsiella.;" source="Edwardsiella ictaluri (strain 93-146).;"
scnpilot_solids2_trim150_scaffold_1654_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2500..3114)
DNA (615bp) protein (205aa)
type-F conjugative transfer system protein TraW; K12061 conjugal transfer pilus assembly protein TraW id=12497070 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
membrane lipoprotein lipid attachment site; K12061 conjugal transfer pilus assembly protein TraW
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_solids2_trim150_scaffold_1654_5
unknown

Not on your lists

comp(3127..3534)
DNA (408bp) protein (136aa)
id=12497071 bin=THIO_MID tax=THIO_MID organism_group=Betaproteobacteria
scnpilot_solids2_trim150_scaffold_1654_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3551..4096)
DNA (546bp) protein (182aa)
signal peptidase I (EC:3.4.21.89); K12062 conjugal transfer pilin signal peptidase TrbI
type IV secretory pathway protease TraF-like protein; K12062 conjugal transfer pilin signal peptidase TrbI id=12497072 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_solids2_trim150_scaffold_1654_7
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4093..4521)
DNA (429bp) protein (143aa)
hypothetical protein id=12497073 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_solids2_trim150_scaffold_1654_8
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4518..7091)
DNA (2574bp) protein (858aa)
protein TraC; K12063 conjugal transfer ATP-binding protein TraC id=12497074 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
protein TraC; K12063 conjugal transfer ATP-binding protein TraC rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_solids2_trim150_scaffold_1654_9
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7088..7669)
DNA (582bp) protein (194aa)
type IV conjugative transfer system protein TraV; K12064 conjugal transfer pilus assembly protein TraV id=12497075 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
membrane lipoprotein lipid attachment site; K12064 conjugal transfer pilus assembly protein TraV
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_solids2_trim150_scaffold_1654_10
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7666..8466)
DNA (801bp) protein (267aa)
disulfide bond isomerase, DsbC/G; K03981 thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
hypothetical protein id=12497076 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_solids2_trim150_scaffold_1654_11
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8484..9722)
DNA (1239bp) protein (413aa)
protein TraB; K12065 conjugal transfer pilus assembly protein TraB id=12497077 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
protein TraB; K12065 conjugal transfer pilus assembly protein TraB
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_solids2_trim150_scaffold_1654_12
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9722..10465)
DNA (744bp) protein (248aa)
hypothetical protein; K12066 conjugal transfer pilus assembly protein TraK id=12497078 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
hypothetical protein; K12066 conjugal transfer pilus assembly protein TraK
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_solids2_trim150_scaffold_1654_13
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10425..11018)
DNA (594bp) protein (198aa)
type IV conjugative transfer system protein TraE; K12067 conjugal transfer pilus assembly protein TraE id=12497079 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
type IV conjugative transfer system protein TraE; K12067 conjugal transfer pilus assembly protein TraE
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_solids2_trim150_scaffold_1654_14
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11018..11308)
DNA (291bp) protein (97aa)
protein TraL; K12068 conjugal transfer pilus assembly protein TraL id=12497080 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
protein TraL; K12068 conjugal transfer pilus assembly protein TraL
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_solids2_trim150_scaffold_1654_15
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11329..11649)
DNA (321bp) protein (107aa)
TraA protein; K12069 conjugal transfer pilus assembly protein TraA id=12497081 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
TraA protein; K12069 conjugal transfer pilus assembly protein TraA
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_solids2_trim150_scaffold_1654_16
unknown

Not on your lists

comp(11686..11916)
DNA (231bp) protein (77aa)
hypothetical protein id=12497082 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
scnpilot_solids2_trim150_scaffold_1654_17
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11913..12458)
DNA (546bp) protein (182aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037E8A37
OmpA/MotB domain-containing protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_solids2_trim150_scaffold_1654_18
BJP_IG2103_Dechloromonas_63_51, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12455..12925)
DNA (471bp) protein (157aa)
transglycosylase id=12497083 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
lytic transglycosylase catalytic subunit
Tax=BJP_IG2103_Dechloromonas_63_51
scnpilot_solids2_trim150_scaffold_1654_19
unknown

Not on your lists

13349..13783
DNA (435bp) protein (145aa)
id=12497084 bin=THIO_MID tax=THIO_MID organism_group=Betaproteobacteria
scnpilot_solids2_trim150_scaffold_1654_20
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13783..14118
DNA (336bp) protein (112aa)
hypothetical protein id=12497085 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Integrating conjugative element relaxase, PFGI-1 class {ECO:0000313|EMBL:EFF78400.1}; TaxID=742159 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter piechaudii ATCC 43553.;"
Displaying 20 items

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