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scnpilot_solids1_trim150_scaffold_1189_curated

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1189_curated_1
Tetrasphaera elongata, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3..701)
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=Tetrasphaera elongata Lp2 RepID=N0E4M0_9MICO
Uncharacterized protein {ECO:0000313|EMBL:CCH69984.1}; TaxID=1193181 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera elongata Lp2.;"
scnpilot_solids1_trim150_scaffold_1189_curated_2
Mycobacterium sp. VKM Ac-1817D, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1400..2746
DNA (1347bp) protein (449aa)
Succinate-semialdehyde dehydrogenase [NAD] {ECO:0000313|EMBL:AIY45509.1}; EC=1.2.1.16 {ECO:0000313|EMBL:AIY45509.1};; EC=1.2.1.24 {ECO:0000313|EMBL:AIY45509.1};; TaxID=1273687 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium sp. VKM Ac-1817D.;"
gabD; succinate-semialdehyde dehydrogenase (EC:1.2.1.16); K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16]
hypothetical protein n=1 Tax=Nocardioides sp. Iso805N RepID=UPI0003646634
scnpilot_solids1_trim150_scaffold_1189_curated_3
unknown

Not on your lists

comp(2849..3121)
DNA (273bp) protein (91aa)
hypothetical protein
scnpilot_solids1_trim150_scaffold_1189_curated_4
Streptomyces cattleya, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3081..4250)
DNA (1170bp) protein (390aa)
Regulatory protein n=1 Tax=Streptomyces cattleya (strain ATCC 35852 / DSM 46488 / JCM 4925 / NBRC 14057 / NRRL 8057) RepID=F8JTS0_STREN
regulatory protein
Regulatory protein {ECO:0000313|EMBL:AEW96840.1}; TaxID=1003195 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces cattleya (strain ATCC 35852 / DSM 46488 / JCM 4925 / NBRC; 14057 / NRRL 8057).;"
scnpilot_solids1_trim150_scaffold_1189_curated_5
Nocardioides sp. JS614, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4381..5841
DNA (1461bp) protein (487aa)
4-aminobutyrate aminotransferase (EC:2.6.1.19); K07250 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase [EC:2.6.1.19 2.6.1.22]
4-aminobutyrate aminotransferase apoenzyme {ECO:0000313|EMBL:ABL82707.1}; EC=2.6.1.19 {ECO:0000313|EMBL:ABL82707.1};; TaxID=196162 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. (strain BAA-499 / JS614).;"
4-aminobutyrate aminotransferase apoenzyme n=1 Tax=Nocardioides sp. (strain BAA-499 / JS614) RepID=A1SLM2_NOCSJ
scnpilot_solids1_trim150_scaffold_1189_curated_6
Amycolatopsis japonica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5831..6973
DNA (1143bp) protein (381aa)
ABC transporter n=1 Tax=Streptomyces sp. BoleA5 RepID=UPI000369CBAC
potA; spermidine/putrescine transport system ATP-binding protein
Putative ABC transporter ATP-binding protein YdcT {ECO:0000313|EMBL:AIG79528.1}; TaxID=208439 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis japonica.;"
scnpilot_solids1_trim150_scaffold_1189_curated_7
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6979..8241
DNA (1263bp) protein (421aa)
transporter n=1 Tax=Acetobacter aceti RepID=UPI00022607F0
Transporter substrate-binding periplasmic protein {ECO:0000313|EMBL:GAN80647.1}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
ABC transporter binding protein
scnpilot_solids1_trim150_scaffold_1189_curated_8
Salinisphaera hydrothermalis, Salinisphaera, Salinisphaerales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8244..9161
DNA (918bp) protein (306aa)
Binding-protein-dependent transport system inner membrane protein {ECO:0000313|EMBL:KEZ77512.1}; TaxID=1304275 species="Bacteria; Proteobacteria; Gammaproteobacteria; Salinisphaerales; Salinisphaeraceae; Salinisphaera.;" source="Salinisphaera hydrothermalis C41B8.;"
spermidine/putrescine ABC transporter permease id=4195233 bin=GWC2_Chloroflexi_73_18 species=unknown genus=Amycolatopsis taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
potH; binding-protein-dependent transport systems inner membrane component
scnpilot_solids1_trim150_scaffold_1189_curated_9
Salinisphaera hydrothermalis, Salinisphaera, Salinisphaerales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9158..9946
DNA (789bp) protein (263aa)
Inner membrane ABC transporter permease protein {ECO:0000313|EMBL:KEZ77511.1}; TaxID=1304275 species="Bacteria; Proteobacteria; Gammaproteobacteria; Salinisphaerales; Salinisphaeraceae; Salinisphaera.;" source="Salinisphaera hydrothermalis C41B8.;"
ABC transporter permease protein id=4195232 bin=GWC2_Chloroflexi_73_18 species=Streptomyces cattleya genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
ydcV; spermidine/putrescine ABC transporter permease; K02053 putative spermidine/putrescine transport system permease protein
scnpilot_solids1_trim150_scaffold_1189_curated_10
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9998..11461
DNA (1464bp) protein (488aa)
aldehyde dehydrogenase; K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16]
Aldehyde Dehydrogenase n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XA34_NAKMY
Aldehyde Dehydrogenase {ECO:0000313|EMBL:ACV81234.1}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
scnpilot_solids1_trim150_scaffold_1189_curated_11
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11532..14033)
DNA (2502bp) protein (834aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TX12_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCE11000.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1189_curated_12
Amycolatopsis sp. MJM2582, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14067..15245
DNA (1179bp) protein (393aa)
Putative signal transduction histidine kinase n=1 Tax=Amycolatopsis azurea DSM 43854 RepID=M2Q129_9PSEU
Histidine kinase {ECO:0000313|EMBL:KFZ81558.1}; TaxID=1427749 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis sp. MJM2582.;"
GAF sensor signal transduction histidine kinase
scnpilot_solids1_trim150_scaffold_1189_curated_13
Kutzneria albida, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15249..15920)
DNA (672bp) protein (224aa)
LuxR family transcriptional regulator n=1 Tax=Actinomadura madurae LIID-AJ290 RepID=U2N6V6_9ACTO
Transcription regulatory protein devR (DosR) {ECO:0000313|EMBL:AHH96584.1}; TaxID=1449976 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria albida DSM 43870.;"
response regulator receiver protein
scnpilot_solids1_trim150_scaffold_1189_curated_14
Knoellia flava, Knoellia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16081..16650
DNA (570bp) protein (190aa)
hypothetical protein n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B739F4
Uncharacterized protein {ECO:0000313|EMBL:KGN28900.1}; TaxID=1385518 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Knoellia.;" source="Knoellia flava TL1.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1189_curated_15
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16797..17555
DNA (759bp) protein (253aa)
oxidoreductase; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
hypothetical protein n=1 Tax=Streptomyces sp. FxanaD5 RepID=UPI0003731CFB
3-oxoacyl-ACP reductase {ECO:0000313|EMBL:ETK38014.1}; TaxID=316330 species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
scnpilot_solids1_trim150_scaffold_1189_curated_16
Tetrasphaera japonica, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17690..19159)
DNA (1470bp) protein (490aa)
pepA; serine protease PepA (EC:3.4.21.-)
septum formation initiator n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B481F8
Peptidase S1 and S6 chymotrypsin/Hap {ECO:0000313|EMBL:CCH79974.1}; TaxID=1194083 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera japonica T1-X7.;"
scnpilot_solids1_trim150_scaffold_1189_curated_17
[Cellvibrio] gilvus, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19481..20746
DNA (1266bp) protein (422aa)
Uncharacterized protein n=1 Tax=Cellvibrio gilvus (strain ATCC 13127 / NRRL B-14078) RepID=F8A769_CELGA
hypothetical protein; K07133
Uncharacterized protein {ECO:0000313|EMBL:AEI13556.1}; TaxID=593907 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellvibrio gilvus (strain ATCC 13127 / NRRL B-14078).;"
scnpilot_solids1_trim150_scaffold_1189_curated_18
Rhodococcus opacus, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20754..22106)
DNA (1353bp) protein (451aa)
Putative MFS transporter n=1 Tax=Rhodococcus opacus (strain B4) RepID=C1AVU1_RHOOB
MFS transporter; K06902 MFS transporter, UMF1 family
Putative MFS transporter {ECO:0000313|EMBL:BAH49371.1}; TaxID=632772 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus opacus (strain B4).;"
scnpilot_solids1_trim150_scaffold_1189_curated_19
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22192..24285
DNA (2094bp) protein (698aa)
phosphate acetyltransferase (EC:2.3.1.8); K13788 phosphate acetyltransferase [EC:2.3.1.8]
Phosphate acetyltransferase {ECO:0000256|PIRNR:PIRNR006107}; EC=2.3.1.8 {ECO:0000256|PIRNR:PIRNR006107};; Phosphotransacetylase {ECO:0000256|PIRNR:PIRNR006107}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
Phosphate acetyltransferase n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8X7C5_NAKMY
scnpilot_solids1_trim150_scaffold_1189_curated_20
Beutenbergia cavernae, Beutenbergia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24282..25406
DNA (1125bp) protein (375aa)
acetate kinase (EC:2.7.2.1); K00925 acetate kinase [EC:2.7.2.1]
Acetate kinase {ECO:0000256|HAMAP-Rule:MF_00020}; EC=2.7.2.1 {ECO:0000256|HAMAP-Rule:MF_00020};; Acetokinase {ECO:0000256|HAMAP-Rule:MF_00020}; TaxID=471853 species="Bacteria; Actinobacteria; Micrococcales; Beutenbergiaceae; Beutenbergia.;" source="Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432).;"
Acetate kinase n=1 Tax=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) RepID=C5BZW3_BEUC1
scnpilot_solids1_trim150_scaffold_1189_curated_21
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25606..27957
DNA (2352bp) protein (784aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
Superfamily I DNA and RNA helicase-like protein n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XIV5_NAKMY
superfamily I DNA and RNA helicase-like protein
scnpilot_solids1_trim150_scaffold_1189_curated_22
Kribbella flavida, Kribbella, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27923..29374)
DNA (1452bp) protein (484aa)
hypothetical protein n=1 Tax=Deinococcus apachensis RepID=UPI00036067E1
diguanylate cyclase
Diguanylate cyclase {ECO:0000313|EMBL:ADB29699.1}; TaxID=479435 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Kribbella.;" source="Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399).;"
scnpilot_solids1_trim150_scaffold_1189_curated_23
Streptomyces mobaraensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29507..30547)
DNA (1041bp) protein (347aa)
Uncharacterized protein n=1 Tax=Streptomyces mobaraensis NBRC 13819 = DSM 40847 RepID=M2ZYV1_STRMB
Uncharacterized protein {ECO:0000313|EMBL:EME97938.1}; TaxID=1223523 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces mobaraensis NBRC 13819 = DSM 40847.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1189_curated_24
Streptomyces sp. CNQ-509, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30620..31570
DNA (951bp) protein (317aa)
LysR family transcriptional regulator n=1 Tax=Streptomyces sp. MspMP-M5 RepID=UPI0003705474
LysR family transcriptional regulator {ECO:0000313|EMBL:AKH81470.1}; TaxID=444103 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. CNQ-509.;"
LysR family transcriptional regulator
scnpilot_solids1_trim150_scaffold_1189_curated_25
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31706..32911)
DNA (1206bp) protein (402aa)
class V aminotransferase; K01556 kynureninase [EC:3.7.1.3]
Kynureninase {ECO:0000256|PIRNR:PIRNR038800}; EC=3.7.1.3 {ECO:0000256|PIRNR:PIRNR038800};; Flags: Precursor;; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
Kynureninase n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8X828_NAKMY
scnpilot_solids1_trim150_scaffold_1189_curated_26
Nocardia brasiliensis, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32925..34094)
DNA (1170bp) protein (390aa)
YqjV-like MFS-type transporter n=1 Tax=Nocardia brasiliensis ATCC 700358 RepID=K0ESM1_9NOCA
yqjV-like MFS-type transporter
YqjV-like MFS-type transporter {ECO:0000313|EMBL:AFU00492.1}; TaxID=1133849 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia brasiliensis ATCC 700358.;"
Displaying 26 items

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