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scnpilot_solids1_trim150_scaffold_1074_curated_39

Organism: solids_Actinobacteria_1

near complete RP 50 / 55 MC: 2 BSCG 50 / 51 ASCG 13 / 38
Location: comp(36985..37602)

Top 3 Functional Annotations

Value Algorithm Source
Sigma-24 n=1 Tax=Frankia sp. (strain CcI3) RepID=Q2J5B1_FRASC similarity UNIREF
DB: UNIREF100
  • Identity: 48.5
  • Coverage: 206.0
  • Bit_score: 170
  • Evalue 2.50e-39
sigma-24; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 48.5
  • Coverage: 206.0
  • Bit_score: 170
  • Evalue 7.80e-40
Sigma-24 {ECO:0000313|EMBL:ABD13531.1}; TaxID=106370 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain CcI3).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 48.5
  • Coverage: 206.0
  • Bit_score: 170
  • Evalue 3.50e-39

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Taxonomy

Frankia sp. CcI3 → Frankia → Frankiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 618
GTGCGTGGGCCGGCGGCGGCGTCGCCACGAGTTGCGGAGGGTAGCGACCTCGGGACTGAACTCGACGCCGTCGTCTCCCGCGCCGTCGGCGGCGACGAGGCGGCCTTCGTGGTGTTGTTCCGCACGCTCCAGCCCCTCTTGCTGCGCTACTTGCACGGCGTGGCGCCGGACGCGAGTGACGACATTGCGGGCGAGGTGTGGTTGGACGTCGTCCGCCGACTGAGGACCTTCACCGGCGATGCATCCGCGTTCCGGGGCTGGTTGTTCACCATCGCGCGTCGGCGGGTCATCGACATGCGACGTGCGCGTGACCGTCGCCCGGAGACCTCGCTGGCGGAGCCCCCGGACAACACCGTTGGCCCCGACGCCGCCTCGGAGGCGGATCGATCGATCAGCACTGACCGGGCTGTTGCCCTGATCGCCCAGTTGCCTCTCCAGCAGGCCGAAGTGGTGCTGCTGCGTGTTGTCGCCGGGCTGGATGTGCCGGCTGTGGCGGCGATCGTCGGGCGGCGGGCGGCGACCGTGCGGGTGCAGTCACACAGGGGCCTGCGGCGGCTCGCGGAAATCCTCAATGGGCGTGACGCCATTGTCAAGCGGCCGGCTCGGTCGACGACGTAG
PROTEIN sequence
Length: 206
VRGPAAASPRVAEGSDLGTELDAVVSRAVGGDEAAFVVLFRTLQPLLLRYLHGVAPDASDDIAGEVWLDVVRRLRTFTGDASAFRGWLFTIARRRVIDMRRARDRRPETSLAEPPDNTVGPDAASEADRSISTDRAVALIAQLPLQQAEVVLLRVVAGLDVPAVAAIVGRRAATVRVQSHRGLRRLAEILNGRDAIVKRPARSTT*